Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score = 85.9 bits (211), Expect = 4e-21
 Identities = 130/546 (23%), Positives = 222/546 (40%), Gaps = 76/546 (13%)

Query: 7   KTALAAAVIAAATSVSAP-AFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLV 65
           +T     ++  A   SAP A A + L    +  P     F+P   T+    TDF      
Sbjct: 3   RTTFKPLLLTLALISSAPMAQAATTLVYCSEASPA---GFDPSQYTS---GTDFDASAET 56

Query: 66  VFNEM----KGNTPVFR-LAESYKMADDLMSVTFDIRKGVKW------SDGEAFTADDVV 114
           VFN +    +G T V   LA  + ++ D +  TF +R+GVK+      S    F ADDV+
Sbjct: 57  VFNRLTQFKRGGTEVEPGLATRWDVSADGLVYTFHLREGVKFHTTDYFSPSRDFNADDVL 116

Query: 115 YSFGLL------------KAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANS----NVP 158
           ++F  L               P     G+N  + SVEKVDE+ VRF L+  ++    N+ 
Sbjct: 117 FTFQRLLDPQHPFRQAYPTESPYFTDMGLNTTIKSVEKVDEHTVRFNLNNVDAAFVQNLA 176

Query: 159 YEISLIPIVAEHVWKDVKD-PTTFTNENPVGTGPFTVIDTFTPQLYIQ-CRNPNYWDAAN 216
              + +   AE+  + +K+      N+ P+GTGPF V   +     I+   N  YW   +
Sbjct: 177 MSFASVQ-SAEYAAQLLKEGKAGDLNQKPIGTGPF-VFKRYQKDSQIRYAGNTAYWKPED 234

Query: 217 LEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFM 276
           +++D L      +    L K+   E    S +    D      +PN            F+
Sbjct: 235 VKLDNLIFSITPDAAVRLQKLKRGECQ-VSGYPRPADIEVMEQDPNLQVLKQPGFNLGFL 293

Query: 277 V-NFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFA-SGLGYAFEAWS 334
             N  +P       LD +  R+A  MA+D+  II   +  +G +   A     ++F+   
Sbjct: 294 AYNVTHP------PLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSFDPNI 347

Query: 335 DEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFN- 393
            +A H         DV  +K LL +AG              G + +L   +    ++ N 
Sbjct: 348 KDAPH---------DVTKAKALLKEAG-----------VAPGTTIDLWAMTVQRASNPNA 387

Query: 394 -NTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYD-VAYTNYFHGADPFTYWNSGYN 451
             + Q+  +   ++GIKA   + E+  Y +    G +D + Y       DP  +    Y+
Sbjct: 388 RMSAQMIQQDWAKIGIKANIVSYEWGEYIKRAKNGEHDAMIYGWTGDNGDPDNWLGVLYS 447

Query: 452 SALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMS 511
            A   G    ++      D   D L+     + D+ +++ +    QKI+ + QV I  ++
Sbjct: 448 CAAVKGSNYAKWC-----DPAYDQLIQQAKVSTDRQQRIDLYRQAQKIL-KQQVPITPIA 501

Query: 512 GAWMYQ 517
            + ++Q
Sbjct: 502 NSTVFQ 507