Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein from Acidovorax sp. GW101-3H11

 Score = 93.6 bits (231), Expect = 2e-23
 Identities = 133/540 (24%), Positives = 223/540 (41%), Gaps = 77/540 (14%)

Query: 6   KKTALAAAVIAAA---TSVSAPAFARSE-LTIVPDFYPTMVRNFNPYLATNLRTTTDFIY 61
           ++T LA   IAA    TS+ A A  R + +T+     P  +       +         I+
Sbjct: 4   RRTVLATGAIAAVPLTTSLGALAQGRKDAVTLAMTLEPPGLDPTAGAASAIAEIVQYNIF 63

Query: 62  EPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLK 121
           E L   N     +P+  LAES++++ DL + TF +R+GVK+ +GE FTA  V +S+    
Sbjct: 64  ETLTKINPDGSVSPL--LAESWEVSPDLKTYTFKLRRGVKFQNGEPFTAASVKFSYDRAG 121

Query: 122 AKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKDPTTF 181
            +   ++        + + VD+Y V       N  +  ++  +   A  +  D K   T 
Sbjct: 122 GEKSTNKDKRTFAGITTQVVDDYTVVL----LNKEIDPDLLFVLGQATSIIVDAKSADTN 177

Query: 182 TNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSE 241
            N+ PVGTGP+ +         +     +Y DA  +++       I++    +  ++  +
Sbjct: 178 ANK-PVGTGPYQLQAWNKGSSVVLTAWADYRDAKAIKIKRATFRFISDPAAQVAALLAGD 236

Query: 242 LDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSM 301
           +D      P   R+      N  +    +G++A  +   N     K+ LD+V  RRA + 
Sbjct: 237 VDAFPRVTP---RSVPQFKTNPKFQVVVSGSRAKTILAINNG---KKPLDDVRVRRAIAA 290

Query: 302 ALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAG 361
           A+DR+ +I+    G+G       G  Y   A+    T     G N YD E +KKLLA+AG
Sbjct: 291 AVDRKAVIE----GAGDGYGAPIGSHYVPGAFGYVDT----TGVNPYDPEKAKKLLAEAG 342

Query: 362 FKDVNGDGFVETPSGKSFELLIQSPNGWTDF-NNTVQLAVEQLQEVGIKAKARTPEFAVY 420
            K         TP     EL +  P   T +     ++   QL +VGI AK +  E+A +
Sbjct: 343 IK---------TP----LELTLTLPP--TPYARQGGEVVAAQLAKVGIIAKIQNVEWAQW 387

Query: 421 NQAMLEGTYD--------VAYTNYF---HGADPFTYWNSGYNSALQSGDGMPRFAMHYFT 469
               L GTY         +++   F   + A P  YW   YNS                 
Sbjct: 388 ----LSGTYGSKNYDLTIISHVEPFDLGNFAKPDYYW--AYNS----------------- 424

Query: 470 DKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSE 529
             K + L +    +A   ++  +    Q+++AE+ V   + S  W+   N     G W +
Sbjct: 425 -PKFNDLFNQIKNSARPADRAKLLGDAQRLLAEDSVHAFLYSNQWITVAN-KNLKGLWKD 482