Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., extracellular solute-binding protein, family 5 from Pseudomonas syringae pv. syringae B728a

 Score = 89.4 bits (220), Expect = 3e-22
 Identities = 119/498 (23%), Positives = 209/498 (41%), Gaps = 78/498 (15%)

Query: 48  YLATNLRTTTDFIYEPLVVFNEMKGNTPVF-RLAESYKMADDLMSVTFDIRKGVKWSDGE 106
           Y ++     ++ IY  L  F +  G+T V   LA S+  ++D +  TF +R+GVK+   +
Sbjct: 42  YTSSTDNDASEPIYNRLTEFKQ--GDTTVVPALATSWDTSEDGLVYTFHLREGVKFHSNK 99

Query: 107 AF------TADDVVYSFG-LLKAK-----------PELDQRGINKWVTSVEKVDEYKVRF 148
            F       ADDV+++F  +LK             P     G+NK + SVEK D   V F
Sbjct: 100 NFKPSRDFNADDVLFTFNRMLKPDHPFRVAYPTEFPYFTGMGLNKKIKSVEKTDPLTVVF 159

Query: 149 RLSEANS----NVPYEISLIPIVAEHVWK-----DVKDPTTFTNENPVGTGPFTVIDTFT 199
            L+  ++    N+    + I + AE+  +     DV+D     N+ P+GTGPF V   + 
Sbjct: 160 TLNTVDAAFIQNIAMNFAGI-LSAEYAEQLMAKGDVRD----INQQPIGTGPF-VFQRYQ 213

Query: 200 PQLYIQCR-NPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAA 258
               I+ + N  +WD + +++D L    + +    + K+  +E   + +  P    +  A
Sbjct: 214 KDSQIRYKGNKEFWDPSRVKIDQLIFAIVTDASARMQKLKANECQVSVNPRPADLASLKA 273

Query: 259 ANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSG- 317
                    P         N ++      E L  +  R+A  MA++++ II+  + G+G 
Sbjct: 274 DKSLQVIEKPGFNLGYISYNVRH------EPLGKLQVRQALDMAVNKKAIINAVYQGAGQ 327

Query: 318 -TVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSG 376
             VN            WS + + K       YD E ++ LL  AG K+            
Sbjct: 328 LAVNAMPP------TQWSYDDSIKD----APYDPEKARTLLRAAGVKE------------ 365

Query: 377 KSFELLIQSPNGWTDFNNTVQLAVEQLQ----EVGIKAKARTPEFAVYNQAMLEGTYDVA 432
              EL + +      +N   +L  E LQ    +VGIK K  + E+  Y +    G +D++
Sbjct: 366 -GTELTLWAMPVQRPYNPNAKLMAEMLQADWAKVGIKVKIVSYEWGEYLKRTKNGEHDIS 424

Query: 433 YTNYF-HGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLA 491
              +     DP  +  + Y+     G+    ++M  + DKK D L+     T D+ ++  
Sbjct: 425 LIGWTGDNGDPDNWLGTLYSCDAIGGN---NYSM--WCDKKYDDLIKDAVATTDRVKRTE 479

Query: 492 IAHGIQKIIAENQVTIPV 509
           +    Q+ + E     P+
Sbjct: 480 LYQRAQRYLKEQVPITPI 497