Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., extracellular solute-binding protein, family 5 from Pseudomonas syringae pv. syringae B728a

 Score = 94.0 bits (232), Expect = 1e-23
 Identities = 130/547 (23%), Positives = 227/547 (41%), Gaps = 85/547 (15%)

Query: 7   KTALAAAVIAAATSVSAP-AFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLV 65
           K A+   ++ A+   SAP A A S L    +  P     F+P   T   T TDF      
Sbjct: 3   KHAVIPFLVGASLLASAPFAHAASNLVFCSEGSPA---GFDPGQYT---TGTDFDASAET 56

Query: 66  VFNEMK-----GNTPVFRLAESYKMADDLMSVTFDIRKGVKW------SDGEAFTADDVV 114
           +FN +      G   V  LA  + +++D ++ TF +R+GVK+           F ADDV+
Sbjct: 57  IFNRLSQFERGGTAVVPGLATKWDISEDGLTYTFHLREGVKFHTTPYFKPTREFNADDVL 116

Query: 115 YSFGLLKAK------------PELDQRGINKWVTSVEKVDEYKVRFRLSEANS----NVP 158
           ++F  +  K            P      ++  +  +EK+D++ V+F L   ++    N+ 
Sbjct: 117 FTFNRMIDKDMPYRKAYPTEFPYFTDMAMDTNIKKIEKIDDHTVKFVLGMVDAAFIQNMA 176

Query: 159 YEISLIPIVAEHVWKDVKD-PTTFTNENPVGTGPFTVIDTFTPQLYIQCR-NPNYWDAAN 216
              + I   AE+  K +K+      N+ P+GTGPF V  ++     I+   N +YW   +
Sbjct: 177 MSFASIQS-AEYAAKLLKEGKPELINQQPIGTGPF-VFKSYQKDSNIRYTGNKDYWKPED 234

Query: 217 LEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVP-DIDRTYAAAN------PNHHYWYPA 269
           ++VD L      +    + K+  +E   T+   P D++   A  N         +  Y A
Sbjct: 235 VKVDNLIFAITTDASVRMQKLKKNECQITAYPRPADLEPLKADKNLKMPDQAGFNLGYIA 294

Query: 270 AGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSG--TVNDFASGLG 327
                 +    +P+P     L  ++ R+A  MA+++Q IID  + G+G   VN       
Sbjct: 295 YNVMPQIKGEDHPNP-----LAQLEVRQALDMAVNKQQIIDSVYQGAGQLAVNAMPP--- 346

Query: 328 YAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPN 387
                WS + T K  K    YD E +++LL +AG K        E      + + +Q P 
Sbjct: 347 ---TQWSYDTTIKDAK----YDPEKARQLLKEAGIK--------EGTEITLWAMPVQRP- 390

Query: 388 GWTDFNNTVQLAVEQLQ----EVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYF-HGADP 442
               +N   +L  E LQ    ++GI AK  + E+  Y +    G        +     DP
Sbjct: 391 ----YNPNAKLMAEMLQSDWKKIGINAKIVSYEWGEYIKRAKNGENGAMLIGWSGDNGDP 446

Query: 443 FTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAE 502
             +  + +     +G+   ++      DK  D L+    +T+D+ E+  +    Q ++ +
Sbjct: 447 DNWLGTLFGCDAVNGNNFAKWC-----DKPFDTLIHQAKQTSDQAERTKLYKQAQHLLKD 501

Query: 503 NQVTIPV 509
                P+
Sbjct: 502 AVPMTPI 508