Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., extracellular solute-binding protein, family 5 from Pseudomonas syringae pv. syringae B728a

 Score = 89.0 bits (219), Expect = 4e-22
 Identities = 119/452 (26%), Positives = 188/452 (41%), Gaps = 57/452 (12%)

Query: 7   KTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNL--RTTTDFIYEPL 64
           ++ LA+A++ AA  V+A      +L I    Y   V + +P L      R+     +E L
Sbjct: 6   RSLLASALLLAAGGVTA-----QDLRIG---YADPVSSLDPQLNNYAGDRSVALHAFESL 57

Query: 65  VVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKP 124
           V     + +  +  LA+S+K+ DD  +  F +R  VKW DG   TADD+V+SF   +  P
Sbjct: 58  V---SRRDDKTLPGLAKSWKVVDDT-TWEFALRDDVKWQDGTPLTADDLVFSFERARNVP 113

Query: 125 E--LDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKDVKDPTTFT 182
                  G  + V S++  D++ +  +    N+N+  +I  I IV+ H           +
Sbjct: 114 GSVASYAGAMRTVESIKARDDHTLIIKTRSPNANLLPDIDSIYIVSRHAGAAASSADYNS 173

Query: 183 NENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSEL 242
            +  +GTGP+  +        I  RN NYW       D +    IAN       ++  ++
Sbjct: 174 GKAMIGTGPYRFVSFVPGDRTIFARNDNYW-GGKPTWDKVDFRFIANAANRTAALLAGDV 232

Query: 243 DWTSSFVP-DIDRTYAAANPNHHYWYP----------AAGTQAFMVNFKNPDPAKKEALD 291
           D      P D+ R     N N   +             AG   F+ +      A+   LD
Sbjct: 233 DVIDKVSPTDVARLRKTPNVNVFAYQGLRALIIQPSFRAGPNEFIRDNAGKPLAENPLLD 292

Query: 292 NVDFRRAFSMALDRQTIIDIAFYGSGT-VNDF--ASGLGYAFEAWSDEATHKKYKGFNTY 348
            V  R+A S+A++R  I +    G+ T  N +  A+  GY          + + K    Y
Sbjct: 293 -VRVRKALSLAINRPAINERIMQGTVTEANQWMPANTFGY----------NPQIKNI-PY 340

Query: 349 DVEGSKKLLAKAGFKD-------VNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVE 401
           D++ +K LLA+AGF +       V GD + + P     E++      WT     VQL  E
Sbjct: 341 DLKQAKDLLAQAGFPEGFQLTVHVPGDRYPQAP-----EVMQAVAQFWTRIGVKVQL--E 393

Query: 402 QLQEVGIKAKARTPEFAVYNQAMLEGTYDVAY 433
            L       KA   E A+   A   GT + AY
Sbjct: 394 VLPWAVYAGKANKNELAISVIAWGNGTGEAAY 425