Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., extracellular solute-binding protein, family 5 from Pseudomonas syringae pv. syringae B728a

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 115/524 (21%), Positives = 208/524 (39%), Gaps = 83/524 (15%)

Query: 39  PTMVRNFNPYLATNLRTTTDFIYEPLVVFN---EMKGNTPVFR---LAESYKMADDLMSV 92
           P    NF  Y    L        EPL+V     +  G+ P      +A+S + ++D   V
Sbjct: 76  PVSTGNFLQYGVNELN-------EPLMVGTGQYDPSGDEPTSSYGLIAQSVEYSEDRSWV 128

Query: 93  TFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSE 152
            F++R   ++ DG+  TA DV +S+  L        R   + V  V+ ++ +++RF    
Sbjct: 129 VFNLRPQARFHDGKPITAYDVAFSYRTLLKDGHPQYRTALQEVQRVDILNRHRIRFVFKR 188

Query: 153 A-NSNVPYEISLIPIVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNY 211
           + N  +   +  +P++ +H WKD +D    T E P+G+GP+ +      +  +  R  +Y
Sbjct: 189 SGNPLLILRLGELPVLPQHYWKD-RDFKATTFEPPLGSGPYRITRVQPGRQLVFERVKDY 247

Query: 212 W------DAANLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHY 265
           W      +      D + V    ++D         E         DI   + A N  + Y
Sbjct: 248 WGKDLPVNRGKYNFDRVEVEFYRDSDVAFEAFKAGEF--------DIYIEHQAKNWANGY 299

Query: 266 WYPAAG----------------TQAFMVNFKN---PDPAKKEALD---NVDF--RRAFSM 301
            +PA                  TQ   +N +     D   +EAL    N ++  R  FS 
Sbjct: 300 DFPAVANGQVIKAQIPHRIPTQTQGLFMNTRRAAFADIRVREALGLLFNFEWTNRTLFSD 359

Query: 302 ALDRQTIIDIAFYGSGTVNDFASGLGYAFE-----AWSDEATHKKYK-----------GF 345
           A DR T    ++Y +   +  A+GL    E      + D+     +            G 
Sbjct: 360 AYDRST----SYYPNSEFS--ATGLPTGAEWLLLAPYRDQLPASLFTQPFAPSKTDGGGI 413

Query: 346 NTYDVEGSKKLLAKAGFKDVNGDGFVETPSGK-SFELLIQSPNGWTDFNNTVQLAVEQLQ 404
               +  + KLLA+AG+  ++  G +        FE+L+ +PN        +Q  +E L+
Sbjct: 414 PRETLRKALKLLAEAGW-TLSDKGLLNADKQPLRFEILLVNPN----LERILQPYIEDLR 468

Query: 405 EVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFA 464
            +GI A  RT + A Y Q +    +D+          P       ++S+  + +G   +A
Sbjct: 469 RLGINAGLRTVDRAQYKQRLDRFDFDMILMTLQQTLSPGLEQWQYFHSSQAAINGSKNYA 528

Query: 465 MHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIP 508
                +  +D LL+       +++Q+A A  + +++     +IP
Sbjct: 529 --GIANPVVDALLNKLLAAQTRDDQVAAARALDRVLLSQHYSIP 570