Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  106 bits (264), Expect = 3e-27
 Identities = 122/549 (22%), Positives = 224/549 (40%), Gaps = 77/549 (14%)

Query: 44  NFNPYLATNLRTTT---------DFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTF 94
           + NP++  ++RTT          + +YE L+  ++ +  T    LAE+ +  DD   + F
Sbjct: 67  SLNPFILKSMRTTARGMWDPGFGNLVYESLMQRSQDEPFTMYGLLAETVEWDDDRTFIQF 126

Query: 95  DIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLS-EA 153
           ++    +W+DG   TA+DV+++F LL+ K           V  +EKV E  VRF  + EA
Sbjct: 127 NLNPKARWADGRPVTAEDVIFTFELLRDKGRAPFSNRLSKVAKMEKVGERSVRFTFTEEA 186

Query: 154 NSNVPYEISLIPIVAEH-VWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYW 212
           +  +P  + L P++ +H +  +  D T+   E P+G+GP+ V +    +  +  RNP+YW
Sbjct: 187 DREIPLLLGLSPVLPKHAINVETFDRTSL--EPPLGSGPYRVAEVRPGERIVYRRNPDYW 244

Query: 213 DAANLEVDCLRVPQIANNDQLLGKIVNSELDWTSSF---VPDIDRTYAAANPNHHYWYPA 269
                  D      + N D++  +    E     +F   V DI    +A      Y +PA
Sbjct: 245 -----AKDLPSKVGLDNYDEISVEYFLQENTLFEAFKKGVVDIYAEGSATKWARAYDFPA 299

Query: 270 AGT-QAFMVNFKNPDPA---------KKEALDNVDFRRAFSMALDRQTIIDIAFYGSGT- 318
             +       FK   P+         ++   DN+  R+  ++  D + +    F G+ T 
Sbjct: 300 VRSGNVIKETFKPKTPSGMLGFVFNTRRPMFDNIKLRQGLALVFDFEWVNKNLFDGAYTR 359

Query: 319 -----VNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKK------------------ 355
                 N   S LG A +    +      +  N   ++GS +                  
Sbjct: 360 TQSYWQNSSLSFLGVAADNRELDLMGDVRERINPAILDGSYRLPVTDGSGRDRNVLREAV 419

Query: 356 -LLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQ-LQEVGIKAKAR 413
            LL +AG+   +G       +  +FE++ Q+          V LA ++ L  +GI A+ R
Sbjct: 420 TLLREAGYSIKDGKMVDAKGTPLAFEIMSQNAG-----QEKVALAYQRFLAPLGIAARVR 474

Query: 414 TPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKL 473
           T + + Y        YDV   ++     P     + ++S  +   G   FA     DK +
Sbjct: 475 TVDDSQYQLRSQSFDYDVIIKSFPSSLSPGLEQINRWSSQTRDRQGSDNFA--GVADKDV 532

Query: 474 DGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPV--MSGAWMYQYN-----TT----- 521
           D L+++  +  +  +  A      +++  N   +P+  +   W+ ++      TT     
Sbjct: 533 DKLINNILQARNPEDFTAAVRAHDRLLVNNSYLVPLYHLDAQWIARWKHIGRPTTVPLYG 592

Query: 522 -RFTGWWSE 529
            +   WW E
Sbjct: 593 YQLPSWWDE 601