Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 534 a.a., Twin-arginine translocation pathway signal (NCBI) from Rhodospirillum rubrum S1H

 Score = 87.4 bits (215), Expect = 1e-21
 Identities = 115/476 (24%), Positives = 188/476 (39%), Gaps = 46/476 (9%)

Query: 43  RNFNPYL--ATNLRTTTDFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGV 100
           R  NP L  +T +   T  I E LV        TPV  LA  ++ A D  SVTF +R+GV
Sbjct: 48  RILNPALRASTGVYVITSKIIESLVDLGPDGAPTPV--LATRWEAAADGKSVTFTLREGV 105

Query: 101 KWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYE 160
           KW DG+ FT+ DV YS   L  K       + +++ +V+  D     FR S     +P  
Sbjct: 106 KWHDGKPFTSADVQYSAMELWKKHLNYGTQLQRYLEAVDTPDATTAIFRYSR---TMPLP 162

Query: 161 ISLIP------IVAEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDA 214
           + L        +V  H+++         N  P+GTGPF  ++    Q  +  RNP YW  
Sbjct: 163 LLLRALADLGYVVPRHLFEGTNVLENPANTAPIGTGPFKFVEYQRGQYIVAERNPEYWRK 222

Query: 215 ANLEVDCLRVPQIANNDQLLGKIVNSELD---WTSSFVPDIDRTYAAANPNHHYWYPAAG 271
               +D +    I +       +   ++    +T   + DI+R       +  +   + G
Sbjct: 223 GEPYLDRVVWRFITDKSAASAALETGQVQISAYTQLALSDIER----LAKDSRFEVSSRG 278

Query: 272 TQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSG-TVNDFASGLGYAF 330
            +A   N       +++ L +V  RRA + A+D    ++   YG G     F   +  AF
Sbjct: 279 NEANSFNNTVEFNHRRKELADVRVRRAIAHAVDVDFFVENFLYGRGKRATGFIPSISQAF 338

Query: 331 EAWSDEATHKKYKGF---NTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPN 387
                      Y G      +D + ++ LL +AG+    G        G+ F L +    
Sbjct: 339 -----------YPGGAFPYPFDTKKAEALLDEAGYPRQKG--------GERFSLRLLPIL 379

Query: 388 GWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAML-EGTYDVAYTNYFHGADPFTYW 446
              D         + L EVGIK +    + A    A+  +  +D+A   + +  DP    
Sbjct: 380 NGEDVPQFATFLQQSLAEVGIKVEIVQLDVAGALSAIYKDWNFDLATGWHQYRGDPAVST 439

Query: 447 NSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAE 502
              + S   S  G P      +   ++D L+D      D  ++ A+   +  +I E
Sbjct: 440 TVWFRSG--SPKGAPWTNQFGWESAEVDTLIDDAAAEIDPVKRKALYAQLVDVINE 493