Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., extracellular solute-binding protein from Rhodopseudomonas palustris CGA009

 Score = 92.4 bits (228), Expect = 5e-23
 Identities = 121/545 (22%), Positives = 205/545 (37%), Gaps = 95/545 (17%)

Query: 44  NFNPYLAT---NLRTTTDFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGV 100
           NFN  +A    N+     ++YE L+  ++ +  T    LAE     DD   V + +RK  
Sbjct: 86  NFNLAVAGVKGNIAGPVGYLYETLMTPSQDEVGTEYGLLAEGAAHPDDFSWVIYRVRKEA 145

Query: 101 KWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRL-SEANSNVPY 159
           +W+DG+  TADDVV+SF  LK K         + V   EKV E  VRF   +  N  +P 
Sbjct: 146 RWNDGKPVTADDVVFSFDALK-KYSPRYASYYRHVVKAEKVGERDVRFTFDAPGNRELPT 204

Query: 160 EISLIPIVAEHVWKDV------KDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWD 213
            +  + ++ +H W+        +D +  T E P+G+ P+ + D    +  +  R  +YW 
Sbjct: 205 IVGELMVLPKHWWEGTDAQGRKRDVSATTLEPPLGSAPYKIKDFVAGRSIVLERVKDYWG 264

Query: 214 ------AANLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWY 267
                       D LR     +N   L      + DW    + +  + +A A     Y +
Sbjct: 265 EKLPVRIGQNNFDELRFEYFRDNTVALEAFKADQADW---IMENSAKQWATA-----YDF 316

Query: 268 PAAG----------------TQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDI 311
           PA                   QAF++N       +++   +   RRAF+ A D + +   
Sbjct: 317 PAVNDKRVVKEEFPINDSGRMQAFVLN------TRRQMFKDPRVRRAFNYAFDFEEMNKQ 370

Query: 312 AFYGS-GTVNDFASGLGYA------------FEAWSDEATHKKYKGFNTYDVEGSK---- 354
            FYG    +  F  G   A             E   D+   + +    T  V G+     
Sbjct: 371 LFYGQYKRIASFFEGTELASSGLPEGQELALLETVRDKVPAELFTQPYTNPVGGNPEAVR 430

Query: 355 -------KLLAKAGFKDVNGDGFVETPSGK--SFELLIQSPNGWTDFNNTVQLAVEQLQE 405
                  KL+ +AGF D+     V+ PSGK  + E+L+Q P+               L+ 
Sbjct: 431 ANLREAIKLVKEAGF-DIKDRKLVD-PSGKPVAVEILVQDPSS----ERIALFYKPSLER 484

Query: 406 VGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFT----YWNSGYNSALQSGDGMP 461
           +G+    R  + A Y   +    +D+    +     P      YW S      Q+ +   
Sbjct: 485 LGVTVSIRVVDDAQYQNRIRAFDFDIITDLWGQSLSPGNEQRDYWGS------QAANEQG 538

Query: 462 RFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTT 521
                   +  +D L++      D+   +A    + +++  N   +P       + Y   
Sbjct: 539 SHNTIGIKNPAVDELIEKVIYAKDRPSLIAATRALDRVLLWNFYVVP------QFTYGFM 592

Query: 522 RFTGW 526
           R+  W
Sbjct: 593 RYARW 597