Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., ABC transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

 Score = 87.8 bits (216), Expect = 1e-21
 Identities = 116/494 (23%), Positives = 208/494 (42%), Gaps = 45/494 (9%)

Query: 2   LANIKKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNP-YLATNLRTTTDF- 59
           + ++ + A  ++V  AA +++ P    ++ T + +    +  N     L   +R + D  
Sbjct: 3   MQHLSRRAFLSSVAFAALAITQPRIVHAQDTPLREGVLNVHMNAEQRVLNPAIRASVDVY 62

Query: 60  -----IYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVV 114
                I EPLV  ++ KG  PV  LA ++K + D  ++TF++R+ VKW DG+ FT+ DV 
Sbjct: 63  LVGSKIVEPLVDLDD-KGQ-PVGVLATAWKTSADGKTITFNLRENVKWHDGKPFTSADVQ 120

Query: 115 YSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISL--IP----IVA 168
           Y+   L  K       + K + +V+  D     F+ SE    +P ++ L  +P    I  
Sbjct: 121 YTAMELWKKYLNYGSTLQKSLQAVDTPDPLTAVFQYSEP---MPLDLLLRALPDLGYIAP 177

Query: 169 EHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIA 228
           +H++          N  P+GTGPF  +     Q  I  RNP+YW      +D +    I 
Sbjct: 178 KHIYDGTNILENPANIEPIGTGPFKFVKYERGQYIIAERNPDYWRKGFPYLDRIVWKFIP 237

Query: 229 NNDQLLGKIVNSELD---WTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPA 285
           +       +    +D   +TS  + DI+R       +  +     G +   V        
Sbjct: 238 DKTAAAMALETGSVDLSAYTSLTLSDINR----LREHKDFIVSTKGNEGNAVQNTVEFNF 293

Query: 286 KKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGF 345
           +++ L ++  RRA   A++    I+   YG G        +  + + +   A   K    
Sbjct: 294 RRKELSDIRVRRAIIHAINTDFFIENLLYGFGKRGQ--GPIPQSSDFFVAGAPDLK---- 347

Query: 346 NTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQE 405
             YDV  + KLL +AG+   NG  F           L+ +P G  D ++      + L E
Sbjct: 348 --YDVALANKLLDEAGYPRTNGQRFKLR--------LLPAPWG-EDVSSFATFIQQSLTE 396

Query: 406 VGIKAKARTPEFAVY-NQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFA 464
           VGI+ +    + A + +    +  +D+A   + + +DP       Y S   +  G P   
Sbjct: 397 VGIQVEIVPRDAAGFLSDVYRDWNFDLATGRHQYRSDPAVSTTVWYRSG--ATKGAPWTN 454

Query: 465 MHYFTDKKLDGLLD 478
              + D ++D ++D
Sbjct: 455 QWGWQDAEIDRVID 468