Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 537 a.a., ABC transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

 Score = 77.8 bits (190), Expect = 1e-18
 Identities = 121/530 (22%), Positives = 216/530 (40%), Gaps = 67/530 (12%)

Query: 7   KTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTD--FIYEPL 64
           K A+ A  +AA+ ++ A   A++   ++     + +R  +P L T   T      +Y+ L
Sbjct: 15  KFAVPAFALAASLTLPAAVDAKTIRAVMH----SDLRIIDPGLTTAYITRDHGYMVYDTL 70

Query: 65  VVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKP 124
           +  +      P  ++A+ YK++DD ++ TF +R G+KW DG   TA+D V S      K 
Sbjct: 71  LAMDSKFKVQP--QMAD-YKVSDDKLTYTFTLRDGLKWHDGTPVTAEDCVASLKRWGQKD 127

Query: 125 ELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEI----SLIPIVAEHVWKDVKDPTT 180
            + Q+ + ++  S+E  D   +  +L E  + V   I    SL+P +     +  + P  
Sbjct: 128 GMGQK-LMQFTASLEATDPKTITLKLKEPYALVLESIGKPSSLVPFMMPK--RIAETPAD 184

Query: 181 FTNENPVGTGPFT-VIDTFTPQL-YIQCRNPNY--------WDAANLEVDCLRVPQIANN 230
                 +G+GPF  V   F P +  +  +NP+Y        W +    V   RV  I   
Sbjct: 185 KPIPEQIGSGPFKFVASEFQPGVKAVYVKNPDYIPRKEAPDWTSGGKVVKVDRVEWITMP 244

Query: 231 D--QLLGKIVNSELDWTSSFVPDIDRTYAAANPNH---HYWYPAAGTQAFMVNFKNPDPA 285
           D    +  + + ++D+  +  P  D     A           P        +NF +P   
Sbjct: 245 DAQTAVNALQSGDIDFIEN--PSFDLLPVLAQDKELTIDTLSPLGFQTLGRMNFLHP--- 299

Query: 286 KKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGF 345
                DN   RRA  +A+ ++ ++D             +  G      +D  +    KG 
Sbjct: 300 ---PFDNPKVRRAAFLAMSQKPVLDALVGNPKYYKICGAVFGCGTPLETDVGSETLVKGN 356

Query: 346 NTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQE 405
              +   +KKLLA++G+     DG   TP      + + +P           +A + L++
Sbjct: 357 GMAE---AKKLLAESGY-----DG---TP------IALMAPGDVVTLKAQPIVAAQLLRD 399

Query: 406 VGIKAKARTPEFAVY------NQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDG 459
            G K   +  ++          +   EG +++ +TN+   A P    N   N ++  G G
Sbjct: 400 AGFKVDVQATDWQTVVSRRASQKPPSEGGWNMFFTNW---AGP-DILNPVANVSV-GGQG 454

Query: 460 MPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPV 509
                  +  D K++ L D F +    +EQ  IA  IQK + E  + IP+
Sbjct: 455 KKGGWFGWAEDAKVEELRDKFVRANSPDEQKKIAEEIQKEVYEQVIYIPL 504