Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP) from Phaeobacter inhibens DSM 17395

 Score =  100 bits (249), Expect = 1e-25
 Identities = 115/518 (22%), Positives = 209/518 (40%), Gaps = 46/518 (8%)

Query: 5   IKKTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPL 64
           +K  A   AV     ++S  A A   + +  D  P  + + +  L+      +  +++PL
Sbjct: 1   MKHFASTLAVATLTATLSTAAMAEVTIKVAYDADPVSL-DPHEQLSGGTLQLSHMVFDPL 59

Query: 65  VVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKP 124
           V + +     P  RLAES++  D+  ++ F +R GV +  G A T+ DV ++F  LKA P
Sbjct: 60  VRWTKDLQFAP--RLAESWEQIDET-TMRFKLRDGVTFHSGNALTSADVDWTFDRLKASP 116

Query: 125 ELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVWKD---------- 174
             D +GI    T VE VDE     + SE    + +  + I  +    +            
Sbjct: 117 --DFKGIFAPFTDVEVVDELTFDLKTSEPYPLILHTATYIFPMDSQFYSGTTEDGKEKAE 174

Query: 175 -VKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANL-EVDCLRVPQIANNDQ 232
            VK   +F + N  GTGPFTV +       +  R  +YWD A+   VD + +  I  +  
Sbjct: 175 LVKHGDSFASRNLSGTGPFTVTEREQGVKVVFDRFDSYWDTASEGNVDKIILTPIKEDPT 234

Query: 233 LLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDN 292
            +  ++  ++D+ +   P   +     +       P      F +N       + EA  +
Sbjct: 235 RVAALLAGDVDFIAPVPPTDLKRVEEHDGTTLITEPGTRIITFQLN-----QNRVEAFKD 289

Query: 293 VDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEG 352
              R+A   A++   I+D    G GTV   AS  GY    + +  T +       +DVE 
Sbjct: 290 ARVRKAIDYAVNNAGIVDRIMRGFGTVGAQASPAGYL--GYDESLTPR-------FDVEK 340

Query: 353 SKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNG-WTDFNNTVQLAVEQLQEVGIKAK 411
           +K L+A+AG+ D              F + + +PN  + + +   Q     L ++ IK  
Sbjct: 341 AKALMAEAGYAD-------------GFSVTMMAPNNRYVNDDKIAQAVASMLAKINIKVD 387

Query: 412 ARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDK 471
            +T   A Y     E   D+    +    +    ++           G  ++    + + 
Sbjct: 388 LQTMPKAQYWPTFDERAADMMMIGWHADTEDSANFHQFLTHCPDETTGNGQYNSGNYCNP 447

Query: 472 KLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPV 509
           + D L+     T D+ ++  +   ++ I+  +   IP+
Sbjct: 448 EADALMAEANATTDQTKRGELLRKLEGILYADAAFIPL 485