Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 547 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 90.5 bits (223), Expect = 2e-22
 Identities = 124/536 (23%), Positives = 219/536 (40%), Gaps = 69/536 (12%)

Query: 5   IKKTALAAAVIAAATSVSA--PAFARSELTIVPDFYPTMVRNFNPYLATNLRT---TTDF 59
           +K+  L +A       +SA  P    S L    +  P    +FNP L T+  T   T+  
Sbjct: 5   LKRLTLGSAFCCIVPLLSACGPTRVPSGLVYCSEGNP---ESFNPQLVTSGTTVDATSQQ 61

Query: 60  IYEPLVVFNEMKGN-TPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFT------ADD 112
           +Y+ LV ++   G  TP   LA S+ ++DD    TF++R+ V++   + FT      ADD
Sbjct: 62  LYDGLVDYDARTGEMTP--SLATSWHLSDDEKVYTFELRQDVQFHRSDIFTPSRNFNADD 119

Query: 113 VVYSFGLL------------KAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYE 160
           V++SF  +               P     G  + +  +EK+D+Y V F L   +++  + 
Sbjct: 120 VLFSFNRIIDTDNPYHFVSKSGYPFFQSIGFAELIDDIEKIDDYHVAFHLKHKDAS--FL 177

Query: 161 ISLIPIVAEHVWKDVKDPTTFTNENP------VGTGPFTVIDTFTPQLYIQCRNPNYWDA 214
            +L    A  + K+  D    T +        +GTGPF +ID          RNP YW  
Sbjct: 178 SNLATGFAVILSKEYADQLQRTGQEELLDKLAIGTGPFRLIDYVKNDFIRYYRNPYYW-R 236

Query: 215 ANLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQA 274
              EVD L       +   L K++    D   S +P                    G   
Sbjct: 237 LTPEVDQLVFDITPKSTTRLAKLITG--DCNVSALPKAGELPVVIEKEDLEVESLPGFNV 294

Query: 275 FMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWS 334
               F      ++   ++V  RRA + A+D++ I+   +  +    + A GL     +W+
Sbjct: 295 AFWAFN----TERIPFNDVRVRRALAHAIDKENILRAVYQKTA---EEAVGLLPPL-SWA 346

Query: 335 DEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNN 394
             A  K       Y+ E +++LL +AG K++  D +   P  +     I +PN     + 
Sbjct: 347 YSANEKMI----DYNPEKARELLDEAGVKNLTIDIWA-MPVAR-----IYNPNA----HK 392

Query: 395 TVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNY-FHGADPFTYWNSGYNSA 453
           T +L    L  +G+K      +++V+NQ + +  YD     +    +DP  ++    + A
Sbjct: 393 TAELIQADLANIGVKVNIVNYDWSVFNQKLSQHGYDSVLIGWNADNSDPDNFFTPILSCA 452

Query: 454 -LQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIP 508
            + S     R+      D   D +L++   T D+ ++  +    ++ +AE    +P
Sbjct: 453 SVGSNSNRSRWC-----DPAFDHILNAAKSTTDREKRARLYQEAEQYVAEQVPMLP 503