Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., extracellular solute-binding protein family 5 (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 89.4 bits (220), Expect = 3e-22
 Identities = 108/477 (22%), Positives = 189/477 (39%), Gaps = 73/477 (15%)

Query: 59  FIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFG 118
           ++++PLV + +     P  RLAE ++  +   ++ F +RKGVK+  G   TA DV ++  
Sbjct: 57  WVFDPLVRWTQDMKFEP--RLAEKWEQINPT-TMRFHLRKGVKFHSGNPLTAADVAWTVK 113

Query: 119 LLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISLIPIVAEHVW------ 172
            LK  P  D +G+       + VD+  +    +E     PY   L+  +A +++      
Sbjct: 114 RLKESP--DFKGLYVKFAEPKVVDDNTIDIITTE-----PY--GLVMNLATYIFPMDSKF 164

Query: 173 ------------KDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVD 220
                         VK+  +F NEN  GTGPF V         +   NPNYW   +  VD
Sbjct: 165 YSGTDAAGQPKGAVVKNGASFANENASGTGPFMVAQREHGVKLVLKANPNYW-GKHGNVD 223

Query: 221 CLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQ--AFMVN 278
            + +  I N    +  I+  ++D+ +  VP  D    A NP+       A T+   F +N
Sbjct: 224 TIELTPIKNEATRVAAILKGDVDFITP-VPVQDYDQLAKNPDVEL-ITMASTRIITFQLN 281

Query: 279 FKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEAT 338
            K     +  AL N   R A   A D   I+     G   V              + +  
Sbjct: 282 QK-----RNPALANPKVREAIIAATDHAGIVAKIMKGYTVV--------------TQQQA 322

Query: 339 HKKYKGF-----NTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNG-WTDF 392
            K Y G+       +D+  ++KL+ +AG++             K  EL + +PN  + + 
Sbjct: 323 PKGYPGYIADLKPRFDLAKAQKLMKEAGYE-------------KGLELTMIAPNNRYVND 369

Query: 393 NNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNS 452
               Q  V  + ++GIK   +T   A Y         D+    +    +    +      
Sbjct: 370 EKVAQAFVSMMAKIGIKVNLKTMPKAQYWDEYDAQVADIQMIGWHPDTEDTANYGEYLLM 429

Query: 453 ALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPV 509
                 GM ++    + +KK D L++   +T D  ++ A+    +K+  +    +P+
Sbjct: 430 CANKDTGMGQYNSGNYCNKKYDALIEEANRTTDPKKRDALLQESEKLAYDEAAFVPL 486