Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., Periplasmic dipeptide transport protein from Enterobacter sp. TBS_079

 Score = 99.0 bits (245), Expect = 4e-25
 Identities = 141/576 (24%), Positives = 231/576 (40%), Gaps = 95/576 (16%)

Query: 7   KTALAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDF----IYE 62
           K+ L    +A A    +   A   L    +  P    NFNP L T+  T+ D     +Y 
Sbjct: 2   KSKLTMLTLALAALTVSSTVAAKTLVYCSEGSP---ENFNPQLYTS-GTSVDASAVPVYN 57

Query: 63  PLVVFNEMKGNTPVF-RLAESYKMADDLMSVTFDIRKGVKWSDGEAF------TADDVVY 115
            LV F    G T +   LAE +++++D    TF +RKGVK+   ++F       ADDV++
Sbjct: 58  RLVDFRA--GTTELVPSLAERWEVSEDGKVYTFHLRKGVKFQSNKSFRPTRDFNADDVIF 115

Query: 116 SFGLLK------------AKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEISL 163
           SF   K            +    +       +T+++KVDE+ VRF L  A+   P+   L
Sbjct: 116 SFMRQKDVNHPYHNVSNGSYSNFESLEFGSLITAIDKVDEHTVRFTL--AHPEAPFVADL 173

Query: 164 IPIVAEHVWKDVKDPTTFTNE------NPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANL 217
               A  +  +  D             +P+GTGPF +         +    P YW   + 
Sbjct: 174 AWYFASILSAEYADAMLKAGTPEKVDMDPIGTGPFKLAQYQKDSRILFTAFPEYWQGKS- 232

Query: 218 EVDCLRVPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMV 277
           ++D L      +      KI  +E      F    D     AN + +    A     F+ 
Sbjct: 233 KLDRLVFSITPDASVRFAKIEKNECQ-VMPFPNPADLPRMKANKDINLMSKAGLNTGFLA 291

Query: 278 NFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEA 337
                   +K  LDNV  R+A SMA+++  IID  F+G+GT        G     WS ++
Sbjct: 292 F-----NTQKPPLDNVKVRQALSMAINKPAIIDAVFHGTGTAAKNLLPPG----VWSADS 342

Query: 338 THKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQ 397
             K Y     YD E +K LL +AGF   NG       S   + + +Q P     +N   +
Sbjct: 343 ELKDY----DYDPEKAKALLKEAGF--ANG------ISIDLWAMPVQRP-----YNPNAK 385

Query: 398 LAVEQLQ----EVGIKAKARTPEFAVYNQAMLEGTYDVAY----------TNYFHGADPF 443
              E +Q    +VG++ K  T E+  Y + +  G +  A            N+F      
Sbjct: 386 RMAEMIQADWAKVGVQIKIVTYEWGEYLKRVKGGEHQAALMGWTTATGDPDNFFGPLFTC 445

Query: 444 TYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAEN 503
           T  N G NSA              +  K  D ++       D ++++A+    Q+++  +
Sbjct: 446 TSANGGSNSA-------------KWCYKPFDKIIAEAKSITDHDKRVALYKEAQQMM-HD 491

Query: 504 QVTIPVMSGAWMYQYNTTRFTGWWSEENPKGRPSVW 539
           Q+   +++ + +++      TG+  E +P G+   W
Sbjct: 492 QMPAVMIAHSTIFEPVRKEVTGY--EIDPFGKHLFW 525