Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., oligopeptide-binding protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  100 bits (248), Expect = 2e-25
 Identities = 111/440 (25%), Positives = 197/440 (44%), Gaps = 47/440 (10%)

Query: 80  AESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELDQRGINKWVTSVE 139
           AESY++ D    + F +RKG++W DG   TADDV +++ L+ A           +     
Sbjct: 110 AESYEVLDGGRLLRFKLRKGIRWQDGVELTADDVEFTYKLIIAPTT-----PTPYAGDFL 164

Query: 140 KVDEYKVRFRLS-EANSNVPYEISLI----PIVAEHVWKDVKDPTTFTNENPVGTGPFTV 194
            V E++   R S E   + P+  SLI     I+ +H+ +     TT     PVG GP+ +
Sbjct: 165 AVQEFRKTGRYSFEVRYDKPFARSLISWMQDIMPKHLLEGQDVRTTPFARKPVGAGPY-M 223

Query: 195 IDTFTPQLYIQCR-NPNYWDAANLEVDCLRVPQIANNDQLLGKIVNSELDW----TSSFV 249
           ++++ P   +  R NP+Y++     +D +    I +N  +  ++   +LD        ++
Sbjct: 224 LESWEPGTRLVLRANPDYFE-GRPHIDEVVYRIIPDNATMFLELKAGKLDMMGLSPQQYL 282

Query: 250 PDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTII 309
              D  Y        Y Y + G      N K+P  A      +   RRA + A+DR+ II
Sbjct: 283 RQTD-GYTWERDWRKYRYLSFGYTYLGYNLKHPFFA------DARVRRAIAHAIDREGII 335

Query: 310 DIAFYGSG--TVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNG 367
                G G  TV  +  G       ++D  T        +YD   + ++L +AG++D +G
Sbjct: 336 KGVLLGQGVPTVGPYKPGTW----VYNDRLT------AYSYDPALAAEMLREAGWQDTDG 385

Query: 368 DGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLE- 426
           DG ++   G+ F   I +  G      T  +   QL++VGI+ + RT E+A + +  +  
Sbjct: 386 DGILDR-EGRPFAFTILTNQGNDQRIKTATIIQSQLKDVGIRVQIRTVEWAAFIKEFVNT 444

Query: 427 GTYDVAYTNYFHGADPFTY--WNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTA 484
           G +D     +    DP  Y  W+S      ++  G   F    + + ++D +L+   +T 
Sbjct: 445 GRFDAVILGWNITQDPDAYDVWHSS-----KAEPGGLNFV--GYRNAEVDAVLEKARRTF 497

Query: 485 DKNEQLAIAHGIQKIIAENQ 504
           D++E+       Q+I+  +Q
Sbjct: 498 DQDERKQYYDRFQEIVHRDQ 517