Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., Peptide ABC transporter, permease protein from Pseudomonas fluorescens FW300-N2E2

 Score =  155 bits (393), Expect = 1e-42
 Identities = 100/319 (31%), Positives = 173/319 (54%), Gaps = 13/319 (4%)

Query: 6   RRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEGPWY 65
           RRL      LL+ + + F I   +PGD             TPE++ A++  +G ++ P  
Sbjct: 11  RRLGAAVVTLLIVSMVVFAITAVLPGDAAQQSLGQFA---TPEQVAALRVKMG-LDQPGV 66

Query: 66  VQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGIFAA 125
           ++YL ++ S+L+ ++G SI      V+EL+ G    +L LA    ++S  +  +LGI +A
Sbjct: 67  LRYLHWLMSLLSGDMGVSIS-NATPVSELMAGRVPNTLMLAAATALVSVPVALILGIGSA 125

Query: 126 WKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTSWAF 185
             RG R D F++   L + AVP+ ++A LA+  FA+ L W  +  +Y++  T   +   F
Sbjct: 126 MGRGGRIDGFLSFFTLTMVAVPEFLVATLAVLIFAVNLGWL-SALSYSSEIT---SPLQF 181

Query: 186 IKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNYAAR 245
           ++      V+ L C  + Q+       R  +I+ L   Y+ MA+ KG+S  RVV  +A  
Sbjct: 182 MRTYAL-PVMTLCCVIVAQMARMT---RAAVIDQLDSPYVEMARLKGVSPVRVVLRHALP 237

Query: 246 NALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMTLFM 305
           NA+ P   A+++SL   +GG +I+E IFNYPG+ +++ +A+T RD  ++Q   ++     
Sbjct: 238 NAIGPIANAIALSLSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAY 297

Query: 306 LFFNLLADMLYVVLDPRLR 324
           L   L+AD+  ++ +PRLR
Sbjct: 298 LALVLVADLCAILSNPRLR 316