Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  144 bits (363), Expect = 3e-39
 Identities = 102/348 (29%), Positives = 173/348 (49%), Gaps = 33/348 (9%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAH---------------------A 41
           Y  RRL      L++   +NF+I +A PG PV    AH                     A
Sbjct: 4   YIARRLLLIIPTLVIILLVNFVIVQAAPGGPVEQAIAHLQGIGGASVGGSSNTMTNSSRA 63

Query: 42  TAQVTPERIEAMKQLLGFVEGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGW 101
           +  + P+ I+ +++  GF + P + +    + S    + G S  F   +V +L+      
Sbjct: 64  SRGLDPQLIKDIEKQYGF-DKPAHERLWLMLSSYARLDFGKSF-FRGATVTDLILEKMPV 121

Query: 102 SLFLAGTAVIISFSIGSVLGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAI 161
           ++ L   A +I++ +   LGI  A   GS +D + +  +++  A+P  + AM  +  FA 
Sbjct: 122 TISLGLWATLITYLVSIPLGIRKAVHHGSAFDVWSSTAIIIGYAMPAFLFAMFLIVVFAG 181

Query: 162 G--LSWFPTGYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFL---VNMRNNM 216
           G  L+WFP      +      ++   I D  +H VLP+   S+V IGGF    +  +N+ 
Sbjct: 182 GTSLNWFPVR-GLVSDNFESLSTLGKIADYFWHLVLPV--TSLV-IGGFATLTILTKNSF 237

Query: 217 INLLAEDYITMAKGKGLSENRVVFNYAARNALLPSVTALSMS-LGMAIGGQLIIEIIFNY 275
           +N +   Y+  A+ KG+SE RV++ +  RNA+L  V+ +  + + +   G L+IE+IF+ 
Sbjct: 238 LNEITRQYVVTARAKGMSERRVLYGHVFRNAMLLVVSGIPQAFISVFFAGSLLIEVIFSL 297

Query: 276 PGLGTVLFNAITARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRL 323
            GLG + + A  +RDY V+ G L I TLF L   L+ D+ Y ++DPR+
Sbjct: 298 DGLGRMSYEAAVSRDYPVVFGSLFIFTLFGLLIKLVGDLCYTLVDPRI 345