Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., peptide ABC transporter from Pseudomonas fluorescens FW300-N2E3

 Score =  169 bits (428), Expect = 8e-47
 Identities = 103/323 (31%), Positives = 175/323 (54%), Gaps = 15/323 (4%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           +  +RL+     LL+ + + F + R +PGDP  +M         P+ + + +  LG ++ 
Sbjct: 4   FIAQRLALSVPTLLLISVVVFALIRFIPGDPALLMLGD---MADPQSLASTRAALG-LDH 59

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
              VQ+  +++S+L+ +LG SI      V EL+   F  S  +   AV+++  I    G+
Sbjct: 60  SIGVQFAYWLQSVLSGDLGVSITSKQ-PVLELILDRFSVSASIVLVAVLLAALIAVPAGL 118

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPT-GYAYTAGTTPDWT 181
           FAAWK+ S  D  +  G  ++ ++P   + +L ++ F I L+W P  GYA  A    +  
Sbjct: 119 FAAWKQDSALDLGLVTGATLLLSIPSFWLGLLLLYAFGIKLNWLPVVGYAPFAQNPAEAV 178

Query: 182 SWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFN 241
           ++          VLP+   ++V++G      R + I +L  +YI  A+ KGLSE  V++ 
Sbjct: 179 TYL---------VLPIVTLTLVELGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWR 229

Query: 242 YAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIM 301
           +A  NA  P+ T + + LG  +GG  ++E +F  PG+G ++ +AI ARDY VLQG LL++
Sbjct: 230 HALPNAFAPTWTLIGLILGNLLGGIAVLETVFTLPGIGRLMVDAIYARDYPVLQGCLLLI 289

Query: 302 TLFMLFFNLLADMLYVVLDPRLR 324
           T   +  NLL D+LY + DPR++
Sbjct: 290 TFIYVAVNLLVDLLYPLFDPRVK 312