Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N1B4

 Score =  144 bits (362), Expect = 4e-39
 Identities = 101/349 (28%), Positives = 172/349 (49%), Gaps = 34/349 (9%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAH---------------------- 40
           Y LRRL      L++   +NF+I +A PG PV    A                       
Sbjct: 4   YILRRLLLIIPTLVIILLVNFVIVQAAPGGPVEQAIAQLQGIGGASVGGGSSETMHGSSR 63

Query: 41  ATAQVTPERIEAMKQLLGFVEGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFG 100
           A+  + P+ I+ +++  GF + P   +    +KS    + G S  F   +V +L+     
Sbjct: 64  ASRGLDPQLIKEIEKQYGF-DKPAPERLWLMLKSYARLDFGKSF-FRGATVTDLILEKMP 121

Query: 101 WSLFLAGTAVIISFSIGSVLGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFA 160
            ++ L   A +I++ +   LGI  A   GS +D + +  +++  A+P  + AM  +  FA
Sbjct: 122 VTISLGLWATLITYLVSIPLGIRKAVHHGSHFDIWSSTAIIIGYAMPAFLFAMFLIVVFA 181

Query: 161 IG--LSWFPTGYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFL---VNMRNN 215
            G  L+WFP      +      ++   I D  +H VLP+   + + +GGF    +  +N+
Sbjct: 182 GGTSLNWFPVR-GLVSDNFESLSTLGKITDYFWHLVLPV---TALVVGGFATLTILTKNS 237

Query: 216 MINLLAEDYITMAKGKGLSENRVVFNYAARNALLPSVTALSMS-LGMAIGGQLIIEIIFN 274
            +N +   Y+  A+ KGLSE RV++ +  RNA+L  V+ +  + + +   G L+IE+IF+
Sbjct: 238 FLNEITRQYVVTARAKGLSERRVLYGHVFRNAMLLVVSGIPQAFISVFFAGSLLIEVIFS 297

Query: 275 YPGLGTVLFNAITARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRL 323
             GLG + + A  +RDY V+ G L I TLF L   L+ D+ Y ++DPR+
Sbjct: 298 LDGLGRMSYEAAVSRDYPVVFGSLFIFTLFGLLIKLIGDLCYTLVDPRI 346