Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., Peptide ABC transporter, permease protein from Pseudomonas fluorescens FW300-N1B4

 Score =  158 bits (400), Expect = 1e-43
 Identities = 99/319 (31%), Positives = 174/319 (54%), Gaps = 13/319 (4%)

Query: 6   RRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEGPWY 65
           RRL      LL+ + + F I   +PGD             TPE++ A++  LG ++ P  
Sbjct: 11  RRLGAAVVTLLIVSMVVFAITAVLPGDAAQQALGQFA---TPEQVAALRLKLG-LDQPGV 66

Query: 66  VQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGIFAA 125
           V+YL ++ ++L+ ++G S+    + V+EL+ G    +L LA    ++S  +  +LGI +A
Sbjct: 67  VRYLHWLMNLLSGDMGQSVS-NAMPVSELMAGRVPNTLMLAAVTALVSVPVALILGIGSA 125

Query: 126 WKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTSWAF 185
             RG R D+F++   L + AVP+ ++A LA+  FA+ L W  +  +Y +  T   +   F
Sbjct: 126 MGRGGRVDSFLSFVTLALVAVPEFLVATLAVLIFAVNLGWL-SALSYASDIT---SPLQF 181

Query: 186 IKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNYAAR 245
           ++      V+ L C  + Q+       R  +I+ L   Y+ MA+ KG+S  R+V  +A  
Sbjct: 182 LRTYAL-PVMTLCCVIVAQMARMT---RAAVIDQLDSAYVEMARLKGVSPMRIVLRHALP 237

Query: 246 NALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMTLFM 305
           NA+ P   A+++SL   +GG +I+E IFNYPG+ +++ +A+T RD  ++Q   ++     
Sbjct: 238 NAIGPIANAIALSLSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAY 297

Query: 306 LFFNLLADMLYVVLDPRLR 324
           L   L+AD+  ++ +PRLR
Sbjct: 298 LGLVLIADLCAILSNPRLR 316