Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N1B4

 Score =  156 bits (395), Expect = 6e-43
 Identities = 103/336 (30%), Positives = 164/336 (48%), Gaps = 20/336 (5%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           +  RRL            L F + R +PGDPV +M      +V PE      + LG +  
Sbjct: 4   FIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGER--RVDPEMHAQAMERLG-LNK 60

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P Y QYL YI  +   +LG S++    SV       F  +L L+  A++ +  +G + G+
Sbjct: 61  PLYAQYLDYIGKLAHGDLGESLRTRE-SVWTEFSSLFPATLELSMAALLFAGILGLLAGV 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP--------------T 168
            AA KRGS +D  +    L   ++P     ++ +  F++ L W P              T
Sbjct: 120 IAALKRGSLFDHGVMGVSLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRT 179

Query: 169 GYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMA 228
           G+        D     F  D  +H +LP      + +       R++M+ +L EDYI  A
Sbjct: 180 GFMLIDTLLADDVGAFF--DALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTA 237

Query: 229 KGKGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITA 288
           + KGLS +RVVF +  RNAL+P +T + + +G  + G ++ E IF++PG+G  L  AI A
Sbjct: 238 RAKGLSPSRVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGA 297

Query: 289 RDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
           RDY V+Q  +L++   ++  N + D+LY   +PR+R
Sbjct: 298 RDYPVVQNGILLIACLVILVNFVVDILYGFANPRIR 333