Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  153 bits (386), Expect = 7e-42
 Identities = 101/334 (30%), Positives = 163/334 (48%), Gaps = 16/334 (4%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           +  RR+            L F + R +PGDPV +M      +V PE      + LG +  
Sbjct: 4   FIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGER--RVDPEMHAQAMERLG-LNK 60

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P Y QY+ YI  +   +LG S++    SV       F  +L L+  A+I +  +G + G+
Sbjct: 61  PLYAQYIDYIGKLAQGDLGESLRTRT-SVWSEFTSLFPATLELSLAALIFAGILGLLAGV 119

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP-TGYAYTAGTTPDWT 181
            AA KRGS +D  +    L   ++P     ++ +  F++ L W P +G        P  T
Sbjct: 120 IAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTLGWTPVSGRIDLLYDIPPVT 179

Query: 182 SWAFIK-----------DVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKG 230
            +  I            D  +H +LP      + +       R++M+ +L EDY+  A+ 
Sbjct: 180 GFMLIDTLLSDEQGSFLDALHHMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARA 239

Query: 231 KGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARD 290
           KGLS  RVVF +  RNAL+P +T   + +G  + G ++ E IF++PG+G  L  AI ARD
Sbjct: 240 KGLSPARVVFVHGLRNALIPVLTVFGLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGARD 299

Query: 291 YQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
           Y V+Q  +L++   ++  N + D+LY   +PR+R
Sbjct: 300 YPVVQNGILLIACLVILVNFVVDILYGFANPRIR 333