Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  146 bits (368), Expect = 9e-40
 Identities = 99/349 (28%), Positives = 170/349 (48%), Gaps = 29/349 (8%)

Query: 1   MGYFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAH-------------------- 40
           +GY LRRL      LL    +NF I +A PG PV    A                     
Sbjct: 2   LGYILRRLLLIIPTLLCILLVNFFIVQAAPGGPVEQAIARLQGIGGATVGAGASESAGAG 61

Query: 41  ---ATAQVTPERIEAMKQLLGFVEGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGG 97
              A+  + P  I+ +++  GF + P + +    +K+    + G+S  F   +V +L+  
Sbjct: 62  HSKASRGLDPALIKQIERQYGF-DKPLHERLWLMLKNYARLDFGSSF-FRGATVTDLILQ 119

Query: 98  AFGWSLFLAGTAVIISFSIGSVLGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMF 157
               S+ L   A ++++ +   LGI  A K GS++D + +  +++  A+P  + AML + 
Sbjct: 120 KMPVSISLGLWATLLTYLVSIPLGIRKAVKHGSQFDIWSSTAIIIGYAMPAFLFAMLLVV 179

Query: 158 TFAIG--LSWFPTGYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNN 215
            F  G  L+WFP      +      T+   I D  +H  LP+    I       +  +++
Sbjct: 180 VFCGGTSLNWFPVR-GLVSDNFEQLTTIGKIADYFWHLALPVLALVIGGFATLTLLTKHS 238

Query: 216 MINLLAEDYITMAKGKGLSENRVVFNYAARNALLPSVTALSMS-LGMAIGGQLIIEIIFN 274
            +N +   Y+T A+ KG+SE RV++ +  RNA+L  V+ +  + + +   G L+IE+IF+
Sbjct: 239 FLNEITRQYVTTARAKGMSERRVLYGHVFRNAMLLVVSGIPQAFISVFFAGSLLIEVIFS 298

Query: 275 YPGLGTVLFNAITARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRL 323
             GLG + + A  +RDY V+ G L I T+F L   L+ D+ Y ++DPR+
Sbjct: 299 LDGLGRMSYEAAVSRDYPVVFGSLFIFTVFGLLIKLIGDICYTLVDPRI 347