Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  154 bits (388), Expect = 4e-42
 Identities = 99/325 (30%), Positives = 165/325 (50%), Gaps = 19/325 (5%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + LRRL      L++ +   F + + +PGDPV  M          E +    +L    + 
Sbjct: 4   FILRRLLSSIPTLILVSLFVFTLQKLLPGDPVLAMAGEERDPAVMEYLRDKYRL----DD 59

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P  +QYL ++ ++LT +LGTS++    +V  LL      ++ LA  A++I+  IG   GI
Sbjct: 60  PIPLQYLNWVGNVLTGDLGTSLRTEQ-AVTTLLASKLPVTIELAVLALLIALLIGIPTGI 118

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
            +A ++G+  D       L   ++P   + +L +  FA+ L W P       G       
Sbjct: 119 ISAVRKGTAVDYGANVVALSGISIPHFWLGILLIMVFAVKLQWLPASGFVPMG------- 171

Query: 183 WAFIKDVGYHA---VLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVV 239
               +D G +    +LP F       G  + + R+ M+ +L  DY+  A+ KGL    V+
Sbjct: 172 ----EDFGQNLKTLILPAFVLGAGLSGILMRHTRSAMLEVLRTDYVRTARAKGLFPRTVI 227

Query: 240 FNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLL 299
             +A RNAL+P VT  ++  G  +GG ++ E +F+ PG G ++ +A+  RDY V+QG +L
Sbjct: 228 LKHALRNALMPIVTLTTLLFGELLGGAVLTEQVFSIPGFGKMIVDAVFNRDYAVVQGVVL 287

Query: 300 IMTLFMLFFNLLADMLYVVLDPRLR 324
            + +  L  NLLAD+LY +++PRLR
Sbjct: 288 CVAIGFLMLNLLADVLYRLINPRLR 312