Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  163 bits (412), Expect = 6e-45
 Identities = 103/320 (32%), Positives = 175/320 (54%), Gaps = 13/320 (4%)

Query: 5   LRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEGPW 64
           ++R       LL+ + + F I   +PGD             TPE++ A++  LG ++ P 
Sbjct: 10  VQRFGAAIVTLLIVSIVVFAITAVLPGDAAQQALGQFA---TPEQVAALRTQLG-LDQPG 65

Query: 65  YVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGIFA 124
            V+YL ++ ++L   LG S+    + V+EL+ G F  +L L+ T  ++S  +   LGI A
Sbjct: 66  VVRYLHWLTNLLGGNLGESVS-NAMPVSELIAGRFPKTLMLSATTALVSVPVALALGIGA 124

Query: 125 AWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTSWA 184
           A  RGSR D+ +    L + AVP+ ++A LA+  FA+ L W  +  +Y A  +   + W 
Sbjct: 125 AMYRGSRLDSALNFITLSLVAVPEFLVATLAVLIFAVNLGWL-SALSYGADVS---SPWQ 180

Query: 185 FIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNYAA 244
           F++      V+ L C  + Q+       R  +I+ L   Y+ MA+ KG+S  R+V  +A 
Sbjct: 181 FMRTYAL-PVMTLCCVIVAQMARMT---RAAVIDQLDSPYVEMARLKGVSPVRIVLRHAL 236

Query: 245 RNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMTLF 304
            NA+ P V A+++SL   +GG +I+E IFNYPG+ +++ +A+T RD  ++QG  ++    
Sbjct: 237 PNAIGPIVNAVALSLSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQGCTMLFCSA 296

Query: 305 MLFFNLLADMLYVVLDPRLR 324
            L   L+AD+  ++ +PRLR
Sbjct: 297 YLGLVLMADLCAILSNPRLR 316