Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  154 bits (388), Expect = 4e-42
 Identities = 97/322 (30%), Positives = 168/322 (52%), Gaps = 11/322 (3%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           Y L+RL      L   + + F++   +PGD  T +     +  TPE +E + + LG ++ 
Sbjct: 4   YVLKRLVAVVPVLFGLSIIVFLVMGLIPGDTATAILG---SYATPENVERINRDLG-LDK 59

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P   QY  +I ++L  + G S       ++E+L   F  +L LAG ++++   IG + G+
Sbjct: 60  PLVQQYAIWIGNVLQGDFGRSFALNRPVLDEVLE-RFQATLVLAGVSLVLCSVIGLLAGV 118

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
            +A ++    D  IT  +L   + P   + +L ++ FA+     P    Y      D   
Sbjct: 119 VSAVRQFGWADRVITFFVLAGISTPSFWLGLLLIYLFAVHWRILPASGMYAVYGRGD--- 175

Query: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
              +KD+  H +LP    ++V  G      R  M+ +L +DY+  A+ KGL E RV++ +
Sbjct: 176 ---LKDLLLHLILPAATLAVVAAGVIARLTRGAMLEVLRQDYVRTARAKGLPERRVIYAH 232

Query: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
           A R AL+  V A+ +  G  +GG + +E +F +PG+G +L  AI+ RD  ++QG +L++ 
Sbjct: 233 AFRAALVSVVPAIGIQAGFVLGGAVYVETVFQWPGIGAMLVKAISTRDILLVQGGVLVVA 292

Query: 303 LFMLFFNLLADMLYVVLDPRLR 324
              + FNLLAD++  +LDPR+R
Sbjct: 293 ASYVLFNLLADVVQSMLDPRIR 314