Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  146 bits (369), Expect = 6e-40
 Identities = 101/338 (29%), Positives = 166/338 (49%), Gaps = 20/338 (5%)

Query: 1   MGYFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFV 60
           + + LRR+     A +    L F +   +PGDP+ +M       V+P R   +   LG +
Sbjct: 2   ISFILRRVVLIIPAFIGVTLLAFALIHLIPGDPILVMAGERG--VSPARHAMLMTQLG-L 58

Query: 61  EGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVL 120
           + P + QYLTY+   L  +LG SI      + E     F  ++ L   A++ +  IG   
Sbjct: 59  DRPLWEQYLTYLGKALQGDLGNSIVTRQPVIEEFKT-LFPATIELGVFAMVFAVLIGIPA 117

Query: 121 GIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFP------------- 167
           G+ AA KRG+  D  +    L   ++P     +L +   +  L W P             
Sbjct: 118 GMLAAVKRGTSLDHGVMVVSLTGYSMPIFWWGLLLIMLVSGILGWTPVSGRIDSIMWIDT 177

Query: 168 -TGYAYTAGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYIT 226
            TG+        D    AF+  V +H +LP      + +       R+ M+ +L EDY+ 
Sbjct: 178 VTGFMLIDSLLSDEPG-AFLSAV-HHLILPAIVVGTIPLAVIARMTRSAMLEVLREDYVR 235

Query: 227 MAKGKGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAI 286
            A+ KG+S  RVV  +A RNAL+P +T + +  G+ + G ++ E IF +PG+G  L ++I
Sbjct: 236 TARAKGVSPGRVVMVHALRNALIPVITVIGLQTGVLLAGAILTETIFAWPGVGKWLVDSI 295

Query: 287 TARDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLR 324
             RDY  +QG +L+++  ++  NLL D+LY V++PR+R
Sbjct: 296 NRRDYPAVQGGILLISTVVILVNLLVDVLYGVINPRIR 333