Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  157 bits (398), Expect = 3e-43
 Identities = 96/328 (29%), Positives = 170/328 (51%), Gaps = 11/328 (3%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAH---ATAQVTPERIEAMKQLLGF 59
           + LRRL+    +LL+     F++ +  PGD V  + A      AQ+    IE ++   G 
Sbjct: 6   FALRRLATSIPSLLIILVGVFLLLQLAPGDTVDALLAQMGGGDAQI----IETLRHFYG- 60

Query: 60  VEGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSV 119
           ++ P  VQ   Y+  ++ ++LG S   Y   V +++      +L L G +++++ S G  
Sbjct: 61  LDAPVAVQLGRYLLRLVQFDLGYSA-IYGKPVIDVIVERLPVTLLLMGASLVVAVSGGVA 119

Query: 120 LGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPD 179
           LG+ AA +     DT I+   LV  A P   + ++A+  FA+ L W P G     G    
Sbjct: 120 LGVLAARRVNKWPDTLISTLGLVFYATPSFWLGLMAVVVFAVKLGWLPPGGFEEVGAGYQ 179

Query: 180 WTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVV 239
             + A   D+  H  LP    S++ +  +L  MR +M+ + + D++  A+ KG+ E ++V
Sbjct: 180 GLTRAL--DIARHMALPTITLSLIFLATYLRIMRASMLEVSSLDFVRTARAKGVDETKIV 237

Query: 240 FNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLL 299
            ++  RNALLP +T + ++    +GG +++E +F  PGLG + + ++  RD   L G +L
Sbjct: 238 THHVLRNALLPMLTLIGLNASTMLGGSVVVESVFTLPGLGRLAYESVVQRDLNTLLGIVL 297

Query: 300 IMTLFMLFFNLLADMLYVVLDPRLRKGG 327
           +  + ++  N + D+LY  LDPR+R  G
Sbjct: 298 LSAVLVIVVNFIVDLLYARLDPRIRAKG 325