Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  143 bits (360), Expect = 6e-39
 Identities = 93/323 (28%), Positives = 158/323 (48%), Gaps = 15/323 (4%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           + LRR+      L+V A + F++ R  PGDP   +     A  T E I  ++  LG ++ 
Sbjct: 4   FLLRRVLATLPVLVVVALIVFLMLRLAPGDPAAAIVG---ATGTAEDIARVRADLG-LDD 59

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P  VQ++ +   +L  +LG S  F   +V  L+      +L L+   ++++  I   LG+
Sbjct: 60  PMPVQFVRWAGQMLQGDLGESF-FMKQTVVALIAQRIEPTLSLSAMTLVMTILIAVPLGV 118

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPT-GYAYTAGTTPDWT 181
            AAW+ G   D  +    ++  ++P  VI    ++ FA+     P  GY         W 
Sbjct: 119 IAAWRHGGWLDRALMGFSVLGFSIPAFVIGYCLIWLFAMHWQMLPVQGYVRFGDDPSRWL 178

Query: 182 SWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFN 241
                     H ++P    SI+ +       R  +   + EDYI  A+ KG+SE RV+  
Sbjct: 179 R---------HLIMPAVTLSIIYVALIARVTRAAVAEAMTEDYIRTARAKGISEVRVLMR 229

Query: 242 YAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIM 301
           +A  NA +P VT + + + M IGG ++ E +F  PGLG +  +A+ +RD+ ++QG  L  
Sbjct: 230 HALANAAVPIVTVIGIGVAMLIGGVVVTEAVFAIPGLGQLTVDAVLSRDFPLIQGITLFF 289

Query: 302 TLFMLFFNLLADMLYVVLDPRLR 324
           ++  +  NL  D+ Y++ DPR+R
Sbjct: 290 SVLYMLINLAVDLSYLLFDPRIR 312