Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., ABC transporter permease from Rahnella sp. WP5

 Score =  166 bits (421), Expect = 5e-46
 Identities = 102/322 (31%), Positives = 166/322 (51%), Gaps = 11/322 (3%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           Y L+RL       +  + + F+I   +PGDP   +     A  TPE +  + Q LG +  
Sbjct: 4   YVLKRLLSTIPVFIGLSLIVFLIMAMIPGDPAQALLG---AWATPENVARINQELG-LNK 59

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P Y QYL +  +IL  + G S       ++E++   FG +L L G A+++S  +G + GI
Sbjct: 60  PLYQQYLIWAGNILHGDFGRSYVLNRPVIDEVME-RFGATLLLGGCALLLSTVLGLLAGI 118

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
            +A ++    D  IT  +L+  ++P   I +L +  FA+ L WFP    Y       W  
Sbjct: 119 LSAVRQFGLGDHIITLLVLLGISMPSFWIGLLLIMLFAVELQWFPASGMYAIWAGGGWL- 177

Query: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
                D+ +H  LP    +IV  G      R  M+ +L +D+I  A+ KGLSE +V++ +
Sbjct: 178 -----DLLHHLTLPAITLAIVATGVIARLTRTAMLEVLRQDFIRTARAKGLSERKVIYKH 232

Query: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
           A R AL+  +  + +  G  +GG + IE +F +PGLG ++  A+  RD  ++QG +L+  
Sbjct: 233 AFRMALVSVIPVIGIQAGFVLGGAVYIETVFQWPGLGAMMVKAVATRDLLLVQGGVLVAA 292

Query: 303 LFMLFFNLLADMLYVVLDPRLR 324
              +  NL AD+L  +LDPRL+
Sbjct: 293 AAYVLINLCADILQALLDPRLK 314