Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., ABC transporter permease from Rahnella sp. WP5

 Score =  155 bits (391), Expect = 2e-42
 Identities = 97/322 (30%), Positives = 171/322 (53%), Gaps = 21/322 (6%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           Y  ++L  +   L+  + L F+  RA+PGDP  +M   A  + T E ++AM+  LG ++ 
Sbjct: 4   YLAKKLIAFPVILIGVSMLIFVSIRALPGDPARLM---AGPEATQEAVDAMRVRLG-LDQ 59

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P   QYL +   +L   LG S++     V + +G    ++L LA  A  ++ ++G   G+
Sbjct: 60  PLVTQYLHFAGDVLQGNLGISLQSQQ-PVTQEIGERMPYTLMLAVLAYFLAVAVGVPAGM 118

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
             A  R    D  +    +   ++    + ++AM TF++ L W P       G T  W S
Sbjct: 119 IGAVYRNRWPDFGVMLLAIAGASIANFWLGLMAMNTFSVNLGWLPL-----LGAT-SWKS 172

Query: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
           +          +LP    +++ +       R++M+++L+EDYI  A+ KGLS   V  ++
Sbjct: 173 Y----------ILPSVTLAVLPMAVMARMTRSSMLDVLSEDYIRTARAKGLSATTVYCSH 222

Query: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
           A RNAL+P VT ++++ G  IGG ++ E +FN+PG+G +L +++  RDY V+QG  L+  
Sbjct: 223 AFRNALIPIVTIVALNFGSLIGGAVVTESVFNWPGIGRLLVDSVRYRDYPVIQGVALVAV 282

Query: 303 LFMLFFNLLADMLYVVLDPRLR 324
             ++  NLL ++L   L+P++R
Sbjct: 283 CGVVVMNLLGELLIAFLNPKIR 304