Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., ABC-type dipeptide/oligopeptide/nickel transport system, permease component from Dechlorosoma suillum PS

 Score =  144 bits (364), Expect = 2e-39
 Identities = 94/321 (29%), Positives = 162/321 (50%), Gaps = 10/321 (3%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEG 62
           Y L+RL +     L    ++F++    PGDP+    A A A    E I+A+K   G ++ 
Sbjct: 4   YILKRLIYAIPIALSVTVVSFVLVYLAPGDPLN---AIAPADAPEEVIQALKSAYG-LDK 59

Query: 63  PWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGI 122
           P  VQY  ++   +  +LG SI        E+L  A   +L LAG A  I   +G +LG 
Sbjct: 60  PVPVQYGLWLMRAVQGDLGLSIASGREVTAEVLS-AVSNTLLLAGMAAAIGVVLGCILGA 118

Query: 123 FAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTS 182
            A ++ G+  D   T   +V  ++P   + ++    F+I L WFP   A   G+      
Sbjct: 119 LAGYRHGTWIDKAATALSVVGVSIPHYWLGLVLTILFSIWLPWFPAMGAGPGGSG----E 174

Query: 183 WAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNY 242
           W +  +   + VLP    S++ +G     +R  + ++L ++++T  + +GLS    VF +
Sbjct: 175 WLWDLEHLRYLVLPALTLSVIPMGIITRTVRALVADMLGQEFVTALRARGLSGG-AVFRH 233

Query: 243 AARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMT 302
            A+N     +    + +G  +GG +++E +F +PG G +L  AI  RD  +LQG +L++ 
Sbjct: 234 VAKNTAPTVLAVAGLQIGYLMGGSILVETVFAWPGTGFLLNTAIFQRDIPLLQGTILVLC 293

Query: 303 LFMLFFNLLADMLYVVLDPRL 323
           +F +  NLL D+L  ++DPR+
Sbjct: 294 MFFVVLNLLVDILQPLIDPRM 314