Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  153 bits (387), Expect = 5e-42
 Identities = 105/337 (31%), Positives = 173/337 (51%), Gaps = 19/337 (5%)

Query: 1   MGYFLRRLSFYFAALLVA----ATLNFIIPRAMPGDPVTM---MFAHATAQVTPERIEAM 53
           M   LRR++   A +L        ++F +    PG P  M   M   A A+ T +R+EA+
Sbjct: 1   MAAMLRRMARKLAWMLFVFWGITIISFWVIHLAPGSPTDMQTTMNPLAGAE-TRKRLEAL 59

Query: 54  KQLLGFVEGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIIS 113
             L    + P +VQY+ ++  +   + G S+   P  V + +      ++ +   +++++
Sbjct: 60  YGL----DKPLHVQYVQWLGRLSRLDFGNSMSSDPRPVWDKIKERLPLTVGMNVASLVLT 115

Query: 114 FSIGSVLGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYT 173
                 +G+ +A  +G  +D  +T  + +  A+P   +A+L M  F I L W P     +
Sbjct: 116 MLCAIPIGVASAHWQGRLFDRAMTVLVFIGFAMPGFWLALLLMLLFGIHLQWLPLSGLTS 175

Query: 174 ---AGTTPDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKG 230
              A  +P   +W    D+  H  +P+F  +   + G    MR +M+ +L +DYI  A+ 
Sbjct: 176 LDHAAMSPMGKAW----DIMAHLAMPIFIYTFGSLAGLSRFMRASMLEVLRQDYILTARA 231

Query: 231 KGLSENRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARD 290
           KGL    V+F +A RNALLP +T L +SL   IGG +IIE IF  PGLG + + A+ ARD
Sbjct: 232 KGLPVRTVIFRHALRNALLPVITILGLSLPGLIGGSVIIESIFALPGLGQLFYQAVMARD 291

Query: 291 YQVLQGQLLIMTLFMLFFNLLADMLYVVLDPRLRKGG 327
           Y ++ G L++  +  L  NLLAD+ Y + DPR+R  G
Sbjct: 292 YPLIMGNLVLGAVLTLVGNLLADLCYGLADPRIRLTG 328