Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  157 bits (397), Expect = 4e-43
 Identities = 103/326 (31%), Positives = 165/326 (50%), Gaps = 9/326 (2%)

Query: 5   LRRLSFYFAALLVAATLNFIIPRAMPGDPV---TMMFAHATAQVTPERIEAMKQLLGFVE 61
           LR+L++     L    + F +    PG P    T M   A A+   +R+E++  L    +
Sbjct: 17  LRKLAWMVVVFLGITVICFWVIHLAPGSPTDLETTMNPLAGAEAR-KRLESIYGL----D 71

Query: 62  GPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLG 121
            P YVQY  ++  ++  + G S+      V E +      ++ +   A+ ++  +   +G
Sbjct: 72  QPLYVQYAQWLGRLVRLDFGNSMSSDGRPVMERIRERLPLTVGMNVAALFLTLLLAVPIG 131

Query: 122 IFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWT 181
           + +A  +G  +D  +T  + +  A+P   +A+L M  F I L W P     T+      +
Sbjct: 132 VASAHWQGGWFDRGMTVLVFIGFAMPGFWLALLLMLFFGIHLGWLPLS-GLTSLDYATLS 190

Query: 182 SWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFN 241
            W    DV  H  LPLF  +   + G    MR+ M+ +L +DYI  A+ KGL    V+F 
Sbjct: 191 PWGKFLDVARHLALPLFIYTFGSLAGMSRFMRSAMLEVLRQDYILTARAKGLPTRTVIFR 250

Query: 242 YAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIM 301
           +A RNALLP +T L +SL   IGG +IIE IF  PGLG + + A+ ARDY ++ G L++ 
Sbjct: 251 HALRNALLPVITILGLSLPGLIGGSVIIESIFALPGLGQLFYTAVMARDYPLIMGNLVLG 310

Query: 302 TLFMLFFNLLADMLYVVLDPRLRKGG 327
            +     NL+AD+ Y + DPR+R  G
Sbjct: 311 AVLTQAGNLIADLCYGLADPRIRNSG 336