Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  216 bits (551), Expect = 5e-61
 Identities = 113/326 (34%), Positives = 180/326 (55%), Gaps = 5/326 (1%)

Query: 3   YFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQ----VTPERIEAMKQLLG 58
           Y + R   +   + +AATL ++IPR  P DP  +M +   A        E I A  +   
Sbjct: 8   YLINRTITFVLTVFIAATLIWLIPRFSPVDPAEIMLSRMAAGGGAVADSEAILAQLRADF 67

Query: 59  FVEGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGS 118
            +  P  VQYL Y+ ++LT+ LG S   +P  V+ L+  A  W+L L   +V+I+F IG+
Sbjct: 68  GLNDPLIVQYLKYMGNLLTFNLGISTASFPTPVSVLIAQALPWTLGLMILSVVITFVIGN 127

Query: 119 VLGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTP 178
            LG F  W+R  +    + P  ++  ++P ++  +L M+ F+I L W P   +Y     P
Sbjct: 128 ALGAFMVWERTPKIWKVVIPTFMIFTSIPPILSGLLLMYIFSITLRWLPLTGSYGLTVEP 187

Query: 179 DWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRV 238
            W  WAFI  V  H  LP     +V  G + + MR  MI++  EDY+ +AK KGL    V
Sbjct: 188 GW-DWAFISSVIEHGTLPALSIIVVTFGFWTLGMRGLMISVQGEDYVNLAKAKGLKPRYV 246

Query: 239 VFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQL 298
           ++ Y  RNA+LP +TA ++ +G+ + GQ+++E IF Y G+G +L++AI  +D+ V+QG  
Sbjct: 247 LYKYMVRNAILPQITAFALKIGLLVSGQILVERIFGYNGMGKLLYDAILDQDFAVIQGVS 306

Query: 299 LIMTLFMLFFNLLADMLYVVLDPRLR 324
            I+ L       L D++Y ++DPR+R
Sbjct: 307 YIIILMTALSVFLVDLIYPLIDPRIR 332