Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  144 bits (363), Expect = 3e-39
 Identities = 98/327 (29%), Positives = 169/327 (51%), Gaps = 12/327 (3%)

Query: 1   MGYFLRRLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFV 60
           + + +RR+      LLV   + F + R + GDP+  +      + T E IE ++  LG +
Sbjct: 2   LAFIIRRVVQSIIVLLVVGLVAFSMFRFV-GDPIDGLLGQ---ERTIEDIERLRAQLG-L 56

Query: 61  EGPWYVQYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVL 120
           + P+ VQY  ++      +LG S +     V E+L      +L LA  + +++   G VL
Sbjct: 57  DDPFLVQYWDFLSRAFQGDLGISYR-QSRPVAEILLERAPATLELALVSGVLAIFFGIVL 115

Query: 121 GIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDW 180
           GIF A +R     + I    L+  ++P  +I +L ++ FA+ L+W P+   +  G   D 
Sbjct: 116 GIFTAIRRDGFAASAIMSISLIGVSLPTFLIGILLIYVFAVELNWLPS---FGRGEVVDL 172

Query: 181 TSWA--FIKDVGYHA-VLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENR 237
             W   F+   G  A +LP     + Q+   +  +R+ M+ +L +DYI  A+ +GL+E  
Sbjct: 173 GGWTTGFLTASGLKALILPAITLGLYQMTLIMRLVRSEMLEVLRQDYIRFARARGLTEKA 232

Query: 238 VVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQ 297
           V F +A +N L+P +T   + LG  I   +I E +F +PG+G +  NAI   D  V+   
Sbjct: 233 VNFRHALKNTLVPVITVTGLQLGSIIAFAIITETVFQWPGVGLLFINAIQFVDIPVMAAY 292

Query: 298 LLIMTLFMLFFNLLADMLYVVLDPRLR 324
           L+++++  +  NL+ D+LY  +DPRLR
Sbjct: 293 LMLISVMFVGINLVVDLLYFAIDPRLR 319