Pairwise Alignments

Query, 328 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., peptide/nickel transport system permease protein from Paraburkholderia graminis OAS925

 Score =  140 bits (353), Expect = 4e-38
 Identities = 96/319 (30%), Positives = 162/319 (50%), Gaps = 13/319 (4%)

Query: 7   RLSFYFAALLVAATLNFIIPRAMPGDPVTMMFAHATAQVTPERIEAMKQLLGFVEGPWYV 66
           RL      LL+ + + F +   +PGD        A    TPE + A++   G ++ P   
Sbjct: 12  RLGLALLTLLLVSAIVFGVTGLLPGDAAQEALGQAA---TPEAVAALRHQFG-LDQPALQ 67

Query: 67  QYLTYIKSILTWELGTSIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIGSVLGIFAAW 126
           +Y  ++  I+T   GTS+    L V++L+      SL LAG   ++S  +  ++GI +A 
Sbjct: 68  RYGQWLFHIVTGNFGTSMS-NNLPVSQLIATRLPNSLVLAGLTAVVSVPLALLIGISSAM 126

Query: 127 KRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTTPDWTSWAFI 186
            RGS  D  +    L   AVP+ ++A +A+  FA+ L W P   +Y +    +  S+  +
Sbjct: 127 FRGSLLDRALNVLTLSTVAVPEFLVATIAVLIFAVKLRWLPA-LSYLS----EVNSFGAL 181

Query: 187 KDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFNYAARN 246
             +    V+ L C  + Q+       R  +++ L   Y+ MA  KG S  RVV  +   N
Sbjct: 182 LRIYAMPVMTLCCVIVAQMARMT---RAAVLDQLNSSYVEMAMLKGASPVRVVLRHVLPN 238

Query: 247 ALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQGQLLIMTLFML 306
            + P   A+++SL    GG +I+E IFNYPGL +++ +A+T RD  ++QG +++     L
Sbjct: 239 TIGPIANAVALSLSYLFGGVVIVESIFNYPGLASLMVDAVTNRDMPLVQGCVMVFCAAYL 298

Query: 307 FFNLLADMLYVVLDPRLRK 325
              L+AD+  +V +PRLR+
Sbjct: 299 ALVLIADLCQIVSNPRLRR 317