Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  123 bits (309), Expect = 5e-33
 Identities = 95/304 (31%), Positives = 141/304 (46%), Gaps = 42/304 (13%)

Query: 5   WKL-----LRGNRMA-MIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAK 58
           W+L     LR  R+A ++G+ IL  + LLA+ AP +   +P                   
Sbjct: 10  WRLALRFGLRNGRLATVLGLAILFGWLLLALFAPWVAPFDP------------------- 50

Query: 59  ANPDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVC 118
                 IA+N  TD R L  S    H  GT   GRDV S+V +GAR+ L +     +   
Sbjct: 51  ------IAQN--TDIRLLGPSLA--HPFGTDNFGRDVLSRVIWGARIDLQISVIGVVFPF 100

Query: 119 FLATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEA-GPLTIALIIGCT 177
            + T +G  AGY GG+ D      ++I+L  P   L+  + A +G   G   IA+ +   
Sbjct: 101 LIGTCVGALAGYIGGRFDTICMRLIDIILAFPFLVLMLAIMAILGPGLGSFYIAMAL--V 158

Query: 178 SWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAI 237
            W   AR++RSQ + L++ +F  AA+ LG    RI+F  +LPN +       +   +  +
Sbjct: 159 GWVSYARLIRSQILVLKQSDFALAAKSLGFGHGRILFRHLLPNAMFGSIVFSMSDAVLVL 218

Query: 238 MMEATISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNF 296
           +  A +S+LGLG  P T  WG M   V    S +  AWW    P L++  L  G +LL  
Sbjct: 219 LNGAAVSYLGLGVQPPTAEWGTM---VAEGQSFITNAWWICTFPGLAIVTLAMGFSLLAD 275

Query: 297 AVDE 300
            V E
Sbjct: 276 GVAE 279