Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., D-ala-D-ala transporter subunit from Pseudomonas fluorescens FW300-N2C3

 Score =  120 bits (301), Expect = 4e-32
 Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 38/308 (12%)

Query: 4   LWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDG 63
           L + L  N M   G+ ++    L+AV AP +  H+P                        
Sbjct: 30  LLRFLLRNPMTFAGLIVVATLMLVAVFAPWIAGHDP------------------------ 65

Query: 64  WIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATV 123
            + +NLA        +    H  GT   GRDV++++ YG+R++L +     + V  +  +
Sbjct: 66  -LLQNLAG----ALQAPSGVHWFGTDEYGRDVFARLVYGSRITLYIVLLVTVIVGPIGLL 120

Query: 124 IGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGP-LTIALI-IGCTSWAW 181
           +G  +GYFGG +D      M I  +   +P L +  AFI   GP L  A+I I  T+W  
Sbjct: 121 VGTVSGYFGGWVDSLF---MRITDIFISFPSLVLALAFIAALGPGLEHAVIAIALTAWPP 177

Query: 182 GARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEA 241
            AR+ R++T+ LR  +FV A ++ G SS RII   I+P  +S V      ++   I+  A
Sbjct: 178 IARLARAETLPLRNADFVVAVQLQGASSTRIILRHIIPMCLSSVIIRLTMNMASIILTAA 237

Query: 242 TISFLGLGDPNTI-SWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDE 300
            + FLGLG    +  WG M   + T    ++ +WW + AP  ++ L+     LL   + +
Sbjct: 238 ALGFLGLGAQAPLPEWGAM---ISTGRRYMLESWWLVAAPGAAIMLVSLAFNLLGDGLRD 294

Query: 301 IANPQLRS 308
           + +P+ +S
Sbjct: 295 VLDPRSQS 302