Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  127 bits (319), Expect = 3e-34
 Identities = 95/304 (31%), Positives = 154/304 (50%), Gaps = 40/304 (13%)

Query: 6   KLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWI 65
           K    N+ A++G  +L LF L AV AP +  H+P                  KAN     
Sbjct: 22  KKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDP-----------------LKAN----- 59

Query: 66  AENLATDRRTLAMSKKADHI--LGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATV 123
                     LA+ K    I  +GT  +GRD++S++ YGAR SL  G  +     F+   
Sbjct: 60  ---------FLAVRKAPSLIYWMGTDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVP 110

Query: 124 IGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALI-IGCTSWAWG 182
           +G+ AGYFGGK+D  ++  M  +L  P   L   L AF+G +  LT A+I IG ++    
Sbjct: 111 LGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPS--LTNAMIAIGLSAMPIF 168

Query: 183 ARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEAT 242
           AR+ R Q ++++ +++++ A  +G     II   +LPN++S +      ++  AI+ EA+
Sbjct: 169 ARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEAS 228

Query: 243 ISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEI 301
           +SFLGLG  P + SWG ML    T+ + +  A W  +AP +++ + V    LL   + + 
Sbjct: 229 LSFLGLGQQPPSPSWGSML---NTAKNFMEQAPWMSIAPGVAIYITVLCFNLLGDGLRDA 285

Query: 302 ANPQ 305
            +P+
Sbjct: 286 LDPK 289