Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  142 bits (358), Expect = 1e-38
 Identities = 95/297 (31%), Positives = 156/297 (52%), Gaps = 31/297 (10%)

Query: 2   KALWKLLRGN---RMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAK 58
           +++W+ LR +   R   IG  +L +  L A+ AP L  ++P         Y   V+   K
Sbjct: 19  RSVWRTLRSSFAHRGFAIGAVLLLIILLGALFAPWLAPYDP---------YAQDVMLRMK 69

Query: 59  ANPDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVC 118
             P  W+A                D++LGT ++GRD  S++ YGAR+SL +GF A +   
Sbjct: 70  --PPVWMANGTW------------DYVLGTDKLGRDYLSRLLYGARISLFIGFSAALISG 115

Query: 119 FLATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTS 178
            + T++G+ AGYFGGK D  ++  +   L +P   +    A+ IG +  + I L +GC  
Sbjct: 116 IIGTIMGLLAGYFGGKTDALISYLITTRLAMPVVMIALASASLIGGSLKVVIVL-LGCLL 174

Query: 179 WAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIM 238
           W   A VVR+    +R+ E+V +A+ LG S+ RI+  EILPNL+  +       + +AI+
Sbjct: 175 WDRFAVVVRAAVQQIRDAEYVASAQALGCSTLRILASEILPNLVGALIVVATLEMAHAIL 234

Query: 239 MEATISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALL 294
           +E+ +SFLG+G  P   SWG+M   +      +  + W +  P ++L +LV G+ L+
Sbjct: 235 LESALSFLGVGVQPPIPSWGLM---IAEGKPYMFFSPWVIAIPGVALMVLVLGINLV 288