Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., ABC transporter for D-Raffinose, permease component 1 (from data) from Sinorhizobium meliloti 1021

 Score =  131 bits (329), Expect = 3e-35
 Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 8/227 (3%)

Query: 84  HILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTAAM 143
           H+LGT + GRDV S++ YG+R+SL +       V  + T +G+ +GYFGG+ D ++   +
Sbjct: 150 HLLGTDKFGRDVLSRILYGSRISLMIALTVVFIVTVVGTTVGMVSGYFGGRFDAWVQRFV 209

Query: 144 NIMLVIPQYPLLFVLAAFIGEAGPLTIAL-----IIGCTSWAWGARVVRSQTMALREKEF 198
            ++L  PQ PL   LA+ I    P  + L     ++    WA  +R VR +T+AL   E+
Sbjct: 210 ELVLAFPQLPLYLALASLIPVTAPTNVFLAFVIIVMSALGWAQMSREVRGKTLALARIEY 269

Query: 199 VKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG-DPNTISWG 257
           V+AA  +G +  RIIF  I PN++S V  +   ++ + +++E+ + FLG    P  ISWG
Sbjct: 270 VRAAIAIGATDRRIIFQHIFPNVMSHVIVAVTLAIPHVVLLESFLGFLGFAVKPPLISWG 329

Query: 258 IMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANP 304
           +ML +  T++   IG++  +L+P   + + V     L   + +  +P
Sbjct: 330 LMLQD--TANYSAIGSYPWILSPVAFVLVTVFAFNALGDGLRDAIDP 374