Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 276 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  141 bits (356), Expect = 2e-38
 Identities = 95/298 (31%), Positives = 150/298 (50%), Gaps = 36/298 (12%)

Query: 11  NRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAENLA 70
           N  A++G+ +L     LA++A LL   +P    G P ++P         NP  W      
Sbjct: 10  NPSAVLGLVLLIAVLGLALSADLLFPRDPLALAGRPLQWPL-------DNPRFW------ 56

Query: 71  TDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGY 130
                          LGT   GRD+ +Q+ +GAR+SL +G  A      L  ++G  AGY
Sbjct: 57  ---------------LGTDNSGRDIAAQIFHGARLSLVIGVVATSIAIALGVLVGALAGY 101

Query: 131 FGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQT 190
           +GG +DD L    +    +P + LL +L A  G     T+ + IG  SW   AR+ R++ 
Sbjct: 102 YGGLVDDALMRITDAFQTLPNFLLLLLLIAVFGSRIE-TVVIAIGIVSWPAPARLTRAEF 160

Query: 191 MALREKEFVKAAEVLGESSWRIIFIEILPNLIS--IVGASFIGSVMYAIMMEATISFLGL 248
           ++LR +EFV+AA + G    R+IF EILPN +   IV AS +  +  AI++E+ ++FL L
Sbjct: 161 LSLRGREFVQAARLAGLRDLRLIFREILPNALPPIIVYASVV--MATAILLESALAFLNL 218

Query: 249 GDPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQL 306
            DPN  SWG +   +     +L   W+    P  ++ L V  ++L+   +++  NP+L
Sbjct: 219 SDPNVSSWGNL---IGQGRGVLRSEWYVSAIPGFAILLTVLAVSLVGQGLNDALNPRL 273