Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  129 bits (324), Expect = 1e-34
 Identities = 87/302 (28%), Positives = 142/302 (47%), Gaps = 34/302 (11%)

Query: 5   WKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGW 64
           W +   N +A+IG+ I     +LA  AP +  H+P                       G 
Sbjct: 40  WLVFIRNPLAVIGLAIFLCLVILATFAPWIAPHDP---------------------LFGT 78

Query: 65  IAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVI 124
           ++E L        +   A H LGT + GRD+WS++ +G+R +L + F   IT   +  +I
Sbjct: 79  LSERL--------LPPSAGHWLGTDQQGRDIWSRIVFGSRTTLMIIFLVAITAAPVGLLI 130

Query: 125 GVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGAR 184
           G +AG+ GG ++  L    +  L  P+  L    AA +G AG     L I  T+W   AR
Sbjct: 131 GTTAGFVGGIVEAALMRLTDAFLAFPKLILALAFAAALG-AGLENAVLAIALTAWPPYAR 189

Query: 185 VVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATIS 244
           + R++T+A+R  +FV AA + G S  RI+  +I+P  I  +       +   I++ A + 
Sbjct: 190 IARAETLAVRRTDFVAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAGVILIAAGLG 249

Query: 245 FLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIAN 303
           FLGLG  P    WG M   V    S ++  WW    P +++ ++  G  LL   + ++ +
Sbjct: 250 FLGLGVAPPQPEWGAM---VSEGRSQILAQWWVCTYPGIAICIVSLGFNLLGDGLRDVLD 306

Query: 304 PQ 305
           P+
Sbjct: 307 PK 308