Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  122 bits (305), Expect = 1e-32
 Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 34/299 (11%)

Query: 8   LRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAE 67
           L GNR+   G+ ++    ++AV AP L  ++P                            
Sbjct: 30  LLGNRLVCGGLAVVIALGVVAVFAPALAPYDP---------------------------- 61

Query: 68  NLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVS 127
            L  D         A H LGT  +GRD++S+V  G  ++L++   A +TV  ++ +IG+ 
Sbjct: 62  -LVQDLSQRLRPPSAAHWLGTDHLGRDIFSRVLCGTPITLSIVTIAALTVLPVSLIIGMV 120

Query: 128 AGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVR 187
           AG+FGG +D  L    ++ L  P   L   LAA +G  G +   + I  T+W   AR+VR
Sbjct: 121 AGFFGGIVDAVLMRTTDVFLSFPLLVLALALAAALG-PGLVNAVIAIALTAWPPLARLVR 179

Query: 188 SQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLG 247
           ++T  L++ +FV A  + G S+ R++  +ILP ++          +   I++ A++ FLG
Sbjct: 180 AETRRLKQADFVAATRLQGASALRLLSFDILPLVLPAALTRLSLDLAGMILIAASLGFLG 239

Query: 248 LG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQ 305
           LG  P +  WG M   V    + L+  WW    P +++ ++     LL   V E+ +P+
Sbjct: 240 LGAQPPSPEWGAM---VAAGRTFLMDQWWVATLPGVAIFIVSFAFNLLGDGVSEVLDPK 295