Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  126 bits (316), Expect = 8e-34
 Identities = 97/294 (32%), Positives = 142/294 (48%), Gaps = 40/294 (13%)

Query: 2   KALWKLLR----GNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAA 57
           ++LWK  R    GNR AM  + IL     LAV  PLL+          PH Y     +A 
Sbjct: 23  RSLWKNARRRFYGNRAAMTSLVILIAILALAVVGPLLS----------PHPYDEIYWEAI 72

Query: 58  KANPDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITV 117
           +  PD   A                    GT   GRD++ +  YGARVSLAVG  A    
Sbjct: 73  QMPPD--FANGFW---------------FGTDGNGRDLFVRTLYGARVSLAVGVIATTVS 115

Query: 118 CFLATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCT 177
             +  V G  AGYFGG++D  +   ++++  +P    + +L    G      I + +G  
Sbjct: 116 LVIGVVYGAIAGYFGGRVDMLMMRFVDVLYSLPFMFFVIMLMVVFGR-NIFLIFVALGAV 174

Query: 178 SWAWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAI 237
            W   AR+VR QTMA+  KEF++AA  +G S   II   ++PN++  V      ++   +
Sbjct: 175 EWLTMARIVRGQTMAVTRKEFIEAAHAIGVSDATIIRRHVIPNILGPVIVYATLTIPQVV 234

Query: 238 MMEATISFLGLG--DPNTISWGIMLYNVQTSSSMLIGAWWELLAPC--LSLTLL 287
           + E+ +SFLGLG  +P T SWG++   +   + +L  + W LL P   L+LTLL
Sbjct: 235 LTESFLSFLGLGVQEPLT-SWGVL---ISEGARVLEVSPWMLLFPAFFLALTLL 284