Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 276 a.a., ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  136 bits (342), Expect = 7e-37
 Identities = 88/296 (29%), Positives = 149/296 (50%), Gaps = 36/296 (12%)

Query: 14  AMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAENLATDR 73
           A++G+ +L L   +A++A  +   +P    G P  +P        +NP            
Sbjct: 13  AIVGLILLLLIIGMAISAGWIYPRDPLALAGRPLIWPF-------SNPR----------- 54

Query: 74  RTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGG 133
                      +LGT   GRD+ +Q+ +GAR++L +G  A +    +  +IG  AGYFGG
Sbjct: 55  ----------FLLGTDNSGRDIAAQIFHGARIALLIGGAATVIAILIGVLIGAFAGYFGG 104

Query: 134 KIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQTMAL 193
            +D  L         +P + LL VL A  G     T+ + +G  SW   AR+ R++ ++L
Sbjct: 105 WVDTVLMRITEAFQTLPNFVLLLVLVAVFGST-LTTVTIAVGIVSWPAPARLTRAEFLSL 163

Query: 194 REKEFVKAAEVLGESSWRIIFIEILPNLIS--IVGASFIGSVMYAIMMEATISFLGLGDP 251
           R +EFV+A   LG    ++I  EILPN +   IV AS + +V  AI++E+ ++FL L DP
Sbjct: 164 RNREFVQAGRTLGMKDLQLILGEILPNALPPVIVYASVVMAV--AILLESALAFLRLSDP 221

Query: 252 NTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLR 307
           N  SWG +   +     +L   W+    P +++ + V  ++L+   +++  NP+L+
Sbjct: 222 NVASWGNL---IGLGRDVLRVQWYVAAIPGIAILITVLAVSLVGQGLNDALNPRLK 274