Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., dipeptide transport system permease protein DppC from Phaeobacter inhibens DSM 17395

 Score =  125 bits (315), Expect = 1e-33
 Identities = 90/309 (29%), Positives = 145/309 (46%), Gaps = 31/309 (10%)

Query: 9   RGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAEN 68
           R + +A++   I+ +  L  + APL+  H P     +P         +   +P+ +  E 
Sbjct: 17  RNSPVAVVSALIVLVLALAVILAPLIAPHNPF----DPATLNLMNGFSKPMHPNEFTGEV 72

Query: 69  LATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSA 128
                           +LGT   GRDV+S + YG R+SL VG  +      L  ++G+ A
Sbjct: 73  F---------------LLGTDDQGRDVFSTILYGMRISLMVGVLSVTFAMVLGIILGLLA 117

Query: 129 GYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPL---------TIALIIGCTSW 179
           GY GG  +  +    ++ L  P   +  ++   +    P+          + L IG   W
Sbjct: 118 GYVGGWTETIIMRVADVQLTFPSILVAMLIFGIVKGVTPVEYRDQMAIWVLILAIGLGEW 177

Query: 180 AWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMM 239
              ARVVR  T+  + +E+V+AA ++G S W I+   +LPN++S V      S+  AI+ 
Sbjct: 178 VQFARVVRGATLVEKNREYVQAARLIGRSKWVIMIRHLLPNVLSPVLVIATISLALAIIA 237

Query: 240 EATISFLGLGDPNT-ISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAV 298
           EAT+SFLG+G P T  S G ++   Q    +  G WW LL P L+L  L   + +L   +
Sbjct: 238 EATLSFLGVGAPPTQPSLGTLIRIGQ--GFLFSGEWWILLFPALTLLTLALSVNMLGDWL 295

Query: 299 DEIANPQLR 307
            +  NP+LR
Sbjct: 296 RDALNPKLR 304