Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., dipeptide transport system permease protein DppC from Phaeobacter inhibens DSM 17395

 Score =  119 bits (299), Expect = 8e-32
 Identities = 88/308 (28%), Positives = 139/308 (45%), Gaps = 32/308 (10%)

Query: 9   RGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAEN 68
           R N +AM+   +  +  + ++ AP+L   +P          PA +       P  WI   
Sbjct: 27  RRNPVAMVSFAVFLVITIASILAPVLAPFDPYD--------PAQIDIMNSEYPPVWID-- 76

Query: 69  LATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSA 128
                        +  + GT   GRD+WS + YG R+SL +G  A     FL   IG+ A
Sbjct: 77  ----------GSDSQFVFGTDDQGRDLWSTILYGTRLSLLIGLCAVALQAFLGISIGLVA 126

Query: 129 GYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAF---------IGEAGPLTIALIIGCTSW 179
           GY GG++D  L    +I L      +  +  A            +     +  +IG   W
Sbjct: 127 GYVGGRLDSLLMRFADIQLSFSTLMVAIIFLAVTQAMFGSETFNQYAIYFLIAVIGVAEW 186

Query: 180 AWGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMM 239
              AR VR+  +A ++KE++ +A VLG    RI+   ILPN +S +       V  AI+ 
Sbjct: 187 PQYARTVRATVLAEKKKEYIDSARVLGFGPMRIMVRHILPNSLSPIFVISTVQVANAIIS 246

Query: 240 EATISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAV 298
           EA++SFLGLG  P+  S G ++ +      +  G+WW    P + L +LV  + LL   +
Sbjct: 247 EASLSFLGLGMPPSQPSLGSLISS--GFDYIFSGSWWITAIPGVVLVVLVLVINLLGDWM 304

Query: 299 DEIANPQL 306
            ++ NP+L
Sbjct: 305 RDVLNPKL 312